DreINT0125427 @ danRer10
Intron Retention
Gene
ENSDARG00000063731 | rbm45
Description
RNA binding motif protein 45 [Source:ZFIN;Acc:ZDB-GENE-070122-4]
Coordinates
chr9:1476920-1477244:-
Coord C1 exon
chr9:1477118-1477244
Coord A exon
chr9:1477043-1477117
Coord C2 exon
chr9:1476920-1477042
Length
75 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGA
5' ss Score
5.73
3' ss Seq
TAATCCGTCCTCCTCATCAGCTT
3' ss Score
4.83
Exon sequences
Seq C1 exon
GTGTATGGAGATATAGAGTACGCTATCATTATACGAAATAAGACCACTGGTGACAGCAAAGGTCTGGGATACGTCAGATTCCACAAACCATCACAAGCTGCCAAAGCCGTTGAAAACTGTGATAAGA
Seq A exon
GTAAGAGTCTCATTCTCCATGCTTCACCACTGCCTGTTGTATTTAGATGTGCTTCTAATCCGTCCTCCTCATCAG
Seq C2 exon
CTTTCAGAGCTATTATAGCAGAGCCCAGAACCAAGAATTCCTCAGCAGACAACGACTATTTCAGCAACCCCAGGACGACGGAGCACTCCACCAGTGAACTAGGCTCCAGCTCATACGCATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063731:ENSDART00000093415:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.381
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=FE(56.8=100)
A:
NA
C2:
PF0007617=RRM_1=PD(2.7=4.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAACCATCACAAGCTGCCA
R:
AAATGCGTATGAGCTGGAGCC
Band lengths:
167-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]