GgaINT0047204 @ galGal4
Intron Retention
Gene
ENSGALG00000009202 | RBM45
Description
RNA-binding protein 45 [Source:RefSeq peptide;Acc:NP_001026423]
Coordinates
chr7:15039461-15041135:-
Coord C1 exon
chr7:15041009-15041135
Coord A exon
chr7:15039572-15041008
Coord C2 exon
chr7:15039461-15039571
Length
1437 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGA
5' ss Score
6.42
3' ss Seq
TGTGTGATGGTTTCTTTCAGGCT
3' ss Score
8.64
Exon sequences
Seq C1 exon
ATGTATGGAGACATTGAATATTGCAGCATTATTAAAAACAAGACTACTGGAGAAAGCAAAGGTTTGGGCTATGTGAGGTACTTAAAACCATCGCAAGCTGCCCGAGCAATTGAAGAGTGTGATCGAA
Seq A exon
GTAAGAATCTAATTAACTCATTGGAATTTTTCATGATGAATGTGTACCATGGTCAATATACCTTTAATTTTTACGTTTGTTTGCAGGTAAATAATTTATGGTGCAGACACATTTTGGGACAAAAGTTCTGTTCCAAATAGAAAATAATATTATTAACATTCACCAAACAATGTTCTTTCATCACCAGCCCCTGGAAGGAAGATCAGTGAAGACTGTGTAGAAATTGATGGAGTTTGTCTTAAATTAGGTGGTGTTCTCATTTAAATTTCATACCCAGGGCAACCTTATTTTTAGGTATATGTGGGAATATGTTTTTAATCAAATATATATTATATATCAAATATATAATAATGTATTTGATAATCCATAAGGATTTTGTTGTGATTACATTTAATCTATATTTGTTCTTAGGTAAGATGAGTGTTTTGCCTTTTTTTTTCCTCCTCCATTTAATAGCAAGGTTAACATATTGCAGAAACAAAGACTGTCTGCTTTACAATCAGCCATTTGTCATTTATGCCCTGGTACCAAACAGTTGTTAAGGACTTGGAGTAAGTCCAGTGGAGGGCTGCTGGAGTGCATGACCCACAAGGAGAGGGCTCAGGGACTGGGCCTGCTCAAACAGTAGAAGAGAGGCTTCTGGAGAAACTTAGCAGCAATGTTCCAGTCCAGCCTCCTTCACTTACTAAATATTAAGCACTGTGGCATGTAGCTTTAGGTTTTTTGTTATTCTTTTTCTTTTTGTTTTGTAGGAGTTTTTTTGCTTGTTTTTGTTTTTTGTTTAATATAATAAATGTAATATCATTAGTAATATCTTAAGGAGTTCTGAACAATTGTTGTCTGTATTCAAGAATACTCAGAAAAATGAGTGATATTTATTAGCAGTTAAATTTTATTTCCTTTCTGATTTGAGTTTGAAATGAAATGGATTAGATGGCCTAAGGGTTAATGCCTGCAATATTGATAAACAACGTGGGTCAGCACAAAACATCTATGAGTGGCTGTTACAGTTGTGTGAAAGTTCAGCTGTTTGCCTCTGGAGCCTCTTCAACTCCTGCCAAATTTCTCAGCACAGTTGAGGTTGGAGTGGACTTCTGGAGTTTGTCTTGTCTGGACGCACATCCAGGTGGCTTTGAATATCAGTTAGGTTATTCACAAGGACTTGCCCCAGGCTTTTTAGGTACTGATACAGAGTCACCCTCAGAGTAAGTAGGCTCACTTGCACTAAATGTGTTTTGCATATGACACTTTCACAAGTTAACTTCCACATCATTGATTATGCCAACTTGCAAGAGTTACATGTTAAATGACAGCATTTGGTGTTTTTTTTTTCTGAATATAATGTTGTTAAGTGAGATATTTGGAGAATGCATATCTATTCAGAAATATTTCAAGTATGCTGAGATGTTGCACTGTGTGTGTGATGGTTTCTTTCAG
Seq C2 exon
GCTACCGGGCCATTTTGGCTGAACCGAAAAATAAGTCATCTGAATCTTTTGAACATGAATATTATAGCAATAACGCAAGGCAAGAACCAAGAGGAAATGTCTTTCCATTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009202:ENSGALT00000014983:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.211
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=FE(57.5=100)
A:
NA
C2:
PF0007617=RRM_1=PD(2.7=5.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGACATTGAATATTGCAGCA
R:
ACATTTCCTCTTGGTTCTTGCCT
Band lengths:
222-1659
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]