BtaINT0123383 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006168 | RBM45
Description
Bos taurus RNA binding motif protein 45 (RBM45), mRNA. [Source:RefSeq mRNA;Acc:NM_001130753]
Coordinates
chr2:18765617-18766006:-
Coord C1 exon
chr2:18765877-18766006
Coord A exon
chr2:18765702-18765876
Coord C2 exon
chr2:18765617-18765701
Length
175 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
3' ss Seq
TTACCTGTTCTTATCTCCAGTCT
3' ss Score
9.1
Exon sequences
Seq C1 exon
GTCATGGAGTGGTTCAGTATTTTAATGTAGCATCAGCTATTTATGCAAAATACAAGTTACATGGATTTCAGTACCCTCCTGGGAATAGGATAGGTGTTTCCTTCATTGATGATGGGAGTAATGCAACAGA
Seq A exon
GTAAGTACCATTCCAGGAACTACTCTAAAGCCACACTTCGGGTGTGCATGCCATGACTGAGAGAATAAAAGTAGAGAACAATTTACCTCTCAGGTGAGGACGTTACGTGAAGCAAGTTATTGTGAGAGACTTGAGTATTTCTAGTTTTCTATAAATTACCTGTTCTTATCTCCAG
Seq C2 exon
TCTCCTTAGAAAAATGGCAACGCAGATGGTCGCTGCACAGCTTGCATCAATTGTGTGGAATAACCCAAGTCAGCAGCAATTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006168:ENSBTAT00000008111:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(49.2=68.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCATGGAGTGGTTCAGTATTTTAA
R:
AGAAATTGCTGCTGACTTGGGT
Band lengths:
214-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]