DreINT0125430 @ danRer10
Intron Retention
Gene
ENSDARG00000063731 | rbm45
Description
RNA binding motif protein 45 [Source:ZFIN;Acc:ZDB-GENE-070122-4]
Coordinates
chr9:1465823-1466802:-
Coord C1 exon
chr9:1466673-1466802
Coord A exon
chr9:1465920-1466672
Coord C2 exon
chr9:1465823-1465919
Length
753 bp
Sequences
Splice sites
5' ss Seq
GAGGTACAG
5' ss Score
6.62
3' ss Seq
GCGTGTGCGTGTGTGTTCAGTCC
3' ss Score
6.11
Exon sequences
Seq C1 exon
GTCAGGTGGTGGTTCGGTATAGTAACCTGGGCTCTGCGGTGTATGCTAAAGAGAAGCTGAACGGGTTCGAGTATCCTCCTGGAAACCGACTCTCTGTATCTTTTGTGGATGATGGAGAGGACAGAACGAG
Seq A exon
GTACAGTCACTTTACAATCATCTGTGTTTAAACCCACATTAAATATACTACAGTAGTTTATTGTTAAAACTATAGTGTTCATAAACCATACTGTAGAAAATATTCTGTATATATTCTAGTATTCACAACTCTTGGTTCATGAATGCCAAAGTGTACAGAGTGTAATGATGAAAATACTGTGGTATACTTTAGTTTTTACCACAATAAACTGTTGTTTATTGTATTATATTTAATGTAGCTGTAGAACAATAAGTACTTTGTTTATTTTACTATAGTTGTCTTGTTACTATTGCAGCTATAGAATTACATCAAATGCTTTTAATATAGTGGAGTTTAAAGTTACTATGTTTTGCTATAAATAAATTACCATAAAGTACTTTTGGCAAGGCATACATGGAATTTTTAATTCTACAGATTACAGATCTACTTTAATTTAGTTGTTTTTTTAGATAAATAGTTGCCTAAGTGTAGTTTATTTTGTTGCATAATAGGTTATTGGTAATAAACTGTCAAAACTGAAAAATCTACAAGACTGTATGTTATCTGGTTGATGCTTTTGCTTGATGTTTTGAACAGACTGTCATTTGGTTTGAACTGTTATTCTGTTAGAGTCTGCTTTACATCAGCAGTGTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTTATTTATTGCGTGTGCGTGTGTGTTCAG
Seq C2 exon
TCCTGTGGGGAAGATGGCAATGCAGCTCGTGGCGGCTCAGATGATGTCTATGGTGTGGAACGGCCCTTCTGGTTCACAGCTAATGAAGACTAGTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063731:ENSDART00000093415:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.098 A=NA C2=0.091
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(48.4=70.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGTGGTGGTTCGGTATAGT
R:
CGCACTAGTCTTCATTAGCTGTGA
Band lengths:
226-979
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]