RnoINT0125235 @ rn6
Intron Retention
Gene
ENSRNOG00000010595 | Rbm45
Description
RNA binding motif protein 45 [Source:RGD Symbol;Acc:628862]
Coordinates
chr3:63230003-63230378:+
Coord C1 exon
chr3:63230003-63230132
Coord A exon
chr3:63230133-63230293
Coord C2 exon
chr3:63230294-63230378
Length
161 bp
Sequences
Splice sites
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
3' ss Seq
TCGTTGGTTGTCGTTTCCAGTCT
3' ss Score
7.39
Exon sequences
Seq C1 exon
GTCATGGCGTGGTTCAGTATTTTAACGTGGCATCGGCTGTTTATGCACAATACAAACTGCATGGATTCCAGTACCCTCCCGGGAATCGGATAGCTGTTTCCTTTCTGGATGACGGAAGTAATTCAGCTGA
Seq A exon
GTAAGTACCATTCCAGGGTGGTCCAGGCCCGACCGGGAAGAAAACATGTGACTGTGGCTCGGAGGATCAGTTCACCTCAAAAAAGACAGCCACCCAAACAGATTTCTGTTAAGATGCTGAACGTTTCTAGTTTCCTGTAAATCGTTGGTTGTCGTTTCCAG
Seq C2 exon
TCTCATCAGGAAAATGGCCACACAGATGGTGGCGGCACAGCTCGCGTCAACGGTGTGGAGTAACCCGAGTCACCAGCAGTTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010595:ENSRNOT00000042968:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(49.2=68.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCATGGCGTGGTTCAGTATT
R:
CAGAAACTGCTGGTGACTCGG
Band lengths:
215-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]