GgaINT0047207 @ galGal3
Intron Retention
Gene
ENSGALG00000009202 | RBM45
Description
NA
Coordinates
chr7:16635676-16637075:-
Coord C1 exon
chr7:16636946-16637075
Coord A exon
chr7:16635773-16636945
Coord C2 exon
chr7:16635676-16635772
Length
1173 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
3' ss Seq
TTTATTATCACTTCTTGCAGCCT
3' ss Score
7.14
Exon sequences
Seq C1 exon
GGTATGCTGTGATTCAGTACAGTACAGCTGCATCAGCTATCTATGCCAAGTATAAGCTACATGGGTTTGAGTATCCTCCTGGAAACAGATTAACTGTCATTTTTCTCGAAGATGGGAATGATAGTTCAGA
Seq A exon
GTAAGTACCGATACATAGAAAAACTGGTAAGTTGTGTTCTGGAGAACAAAGCTATTATTTATTTAACAGTAAAAGGGAACAGTGGTGTTACTAAATTAGTTTCACACTTGGTCTGTTGGTTTTTTTTGTTCTATTTTTTGAATCTTAGAATGAATATCTTGAATTAAGAAGAATTAATTTGAAGAAAGATTAAAATATTTATTCCTAAGACACATTAGGAAATTTGGCAAGAATCCTTAAAGGTCCCTGTGATATGTAATGTGGCTTTGTATTAAAAGCAGGTATTGCTTACTTGATCTGTTAGCGGTGTTTGCAGTGCTGCAGACAGTAGCTTTGTGAAACACACAGGCAGAATAAAGCTGAGGATCTGGTTCTTGCACTTGTAGAAGGATTGCCAGGTTTTACTTCAAACCATATCTGAATGCTGGTAGAAGTCAAAGTAACCTACCTGCTTTTCTTCTAGTGAATACTTTAGATTACTTTAGGAAAGAAATTGAGCTATTTGAGACATCAAAGCTATTCTGGGATACAAAGAATAACAGTGTAGAACCATGATGGGAAAATTCACTTCAGAAGTGTTATGTCTGATCTAAGCTTTAAAAAAAAAAAAATCTTTGCAAATGTCCTTATTGCAAATGTTGTCTTTTGTTTTTCATTACTTACTATGTTTTTGTGGCCTTAAAACATAGGATGTGCATCTGTGTAAATGTGCGATTGCTTTGCTTATCCCCCATCAGAATGAAGGAAAGAATGCTGGAGAATGGGAGCTGGAAATGAGCTTCCTGTGATAATGTTCTGACTTCTGAATTGAATCCCTGTGCTCTTCTTCCTTCTGAGAAACGAGAAACTTCTGTCTCTTTTGCCACCTTGGCACCTTTCACATGAAGTTCAGGGTTTTGTAGAGTTCATGTTTCTCTTTTGTTATAATATTGGAAAAAGCAAGGGAGTTTTGTGTCTCTGTGTAGAATTGAGTATTTTCTGTGAGTTCGAGGTAGAATGTATGCTTTCAGATTGGGTTTAGAGTGTCATGCAAACCTCTTTTAATTATGTACTTGAGTTTGCAGATTATTTTTTAATCTTCATGTGTGTTTTGGAAGATCTTTATTTTCCTCTTGTTGAAGTTAACTGTAACGTAGTTCTTGCTTTAAAACAATTTATTATCACTTCTTGCAG
Seq C2 exon
CCTCATCAGGAAAATGGCAACACAGCTGGTAACAGCACATATGACCTCAGTGTTGCGAAATAATAATGCAGTTGTTCAGCCATATAGGACACCTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009202:ENSGALT00000014983:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.076
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(50.0=70.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGTGATTCAGTACAGTACAGC
R:
GGAGGTGTCCTATATGGCTGA
Band lengths:
222-1395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]