MmuINT0132852 @ mm9
Intron Retention
Gene
ENSMUSG00000042369 | Rbm45
Description
RNA binding motif protein 45 [Source:MGI Symbol;Acc:MGI:2387367]
Coordinates
chr2:76216438-76216819:+
Coord C1 exon
chr2:76216438-76216567
Coord A exon
chr2:76216568-76216734
Coord C2 exon
chr2:76216735-76216819
Length
167 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
3' ss Seq
CCGTCGGTTGTTGTTTCCAGACT
3' ss Score
6.98
Exon sequences
Seq C1 exon
GTCATGGTGTGGTTCAGTATTTTAACGTAGCATCAGCTATTTATGCAAAATACAAACTGCATGGGTTCCAGTACCCTCCTGGGAATCGGATAGTCGTCTCTTTCCTGGATGACGGGAGTAATATGACAGA
Seq A exon
GTAAGTACCATTCCAGGGTGGCCCAAGTCAAACCGCGGGCCATGTGACTCTGGCTTGACGGATAAAAATAAACAGTTCACCTCAGGTGAGGAAGCCACAGCAAACAAATTATTGTTAAGATGCTGAGTATTTCTAGTTTCCCATAAACCGTCGGTTGTTGTTTCCAG
Seq C2 exon
ACTCATCAGGAAAATGGCGACACAGATGGTGGCGGCCCAGCTCGCGTCGATGGTGTGGAGTACCACGAGTCAGCAGCAGTTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042369-Rbm45:NM_153405:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(50.0=70.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGTGGTTCAGTATTTTAACGT
R:
AGAAACTGCTGCTGACTCGTG
Band lengths:
210-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: