BtaINT0123451 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005180 | RBMS1
Description
Bos taurus RNA binding motif, single stranded interacting protein 1 (RBMS1), mRNA. [Source:RefSeq mRNA;Acc:NM_001035361]
Coordinates
chr2:36175122-36176248:+
Coord C1 exon
chr2:36175122-36175232
Coord A exon
chr2:36175233-36176167
Coord C2 exon
chr2:36176168-36176248
Length
935 bp
Sequences
Splice sites
5' ss Seq
ACAGTAGGT
5' ss Score
5.67
3' ss Seq
GACCGTATTCTTCTTTTCAGTAC
3' ss Score
7.59
Exon sequences
Seq C1 exon
GGTGCTGTGTTAACTCCCTCCATGGAGCACACCATGTCACTACAGCCTGCGTCTATGATCAGCCCTCTGGCCCAGCAAATGAGTCATCTGTCACTTGGCAGCACCGGAACA
Seq A exon
GTAGGTGGCAAATTAATATCATGTGTCTTAGCTTACAGAGGAGGCTAAATTCGTGCAGCCCGGTTTTCCTTATCAGTTATAGGCTCTATAATGTCAGAGATTATATCTGATCCCCTCTCACCTCCCACATTGCCTTCCACATAGTAAATACTCAGAGATTTCTTGATTAATTGATGAGCTAAAAGTCTGTCCTCTGACTGGCTGTCTCTCCTGTATCAGAATATAGCATCCAAACAAGACCACTTGTAGCCCTAATAACTGGTATCATTCATTCACACTGGCAGACCTGGTCTCATAAAGCCAAAGATGAAGGTGATACATGGTAATAAAGGCAGGGGATTTTTCCCCACTTACTTCCAATTGTATGGTTTTTAGGGGCACTGAATCACAATCGTAGTATTGACTTTTTCCCCAAGTCCAGGGTTGCATTTGGGTATGGAGTTGAGCTGATATCAGACTAATTTCCAGGTTTGATATGTGTAGCATTTAGATGGTAAGATGACCAAAGGCTTTTAATTGAGACCATATCTGTGGTGACTTAATAGAACAAAGGGTAGTATTTTCTTTGCTTACGTTCACAGCAAACAGCAGCAGCTCGTCAAGGCTAAACCAGGGCCACATACATCGAATGAGAAATCTCTCCTGCCTTTGGAGAAGGATAATTTTCAGCATCAGGAAAGCAAGGGTCCATTTTCCATTTTTTTCCCATTTTTCAGTGACCTGCTGAAGATCTAAGGCATTTACTTCTTGGGTCTCCACTTATGGGAACAATTCTAATTCAGGCAGCTGCTGGAAATGAATGAGGTTTTTTGAGGGAGAAATTTTTCTAGATTAAAATAGCACATTAGTGATATTGAATTATTGAGGATGAGAAACTGTAATGATCTGCACCCATGGCTTGTCATTGGCCACCCTGACCGTATTCTTCTTTTCAG
Seq C2 exon
TACATGCCTGCCACGTCAGCTATGCAAGGGGCCTACTTGCCACAGTACACACACGTGCAGACGGCGGCAGTTCCTGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005180:ENSBTAT00000006826:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.270 A=NA C2=0.185
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCTGTGTTAACTCCCTCC
R:
AGGAACTGCCGCCGTCTG
Band lengths:
186-1121
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]