HsaINT1028991 @ hg38
Intron Retention
Gene
ENSG00000153250 | RBMS1
Description
RNA binding motif single stranded interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:9907]
Coordinates
chr2:160277303-160278658:-
Coord C1 exon
chr2:160278548-160278658
Coord A exon
chr2:160277384-160278547
Coord C2 exon
chr2:160277303-160277383
Length
1164 bp
Sequences
Splice sites
5' ss Seq
ACAGTAGGT
5' ss Score
5.67
3' ss Seq
GACCTCATTCTTCTTTCTAGTAC
3' ss Score
6.92
Exon sequences
Seq C1 exon
GGTGCCGTGTTAACTCCCTCAATGGAGCACACCATGTCACTACAGCCCGCATCAATGATCAGCCCTCTGGCCCAGCAGATGAGTCATCTGTCACTAGGCAGCACCGGAACA
Seq A exon
GTAGGTGGCAAATAATTATCATGTGTCTCTGTAAACAGAGGAGGGTAAATTAATGCAGCCTGTATCTTCCCTATCAAATGACAGCCTCTATGATAACAGATTATGTCTAATCCCCTCTCTTCCCCCCACATGACCTTCCATAAAGTAAATACTCAGCTATTTCTTAATTAATTGATGAACTGAAAGTCTATTCTCTGGGTATCTCTCCTTTACGAGAATATAGCACCCACACGTGACCACATCTAGCCTTTTATGACTAGTGTCATCTATATAACTAGTACCACTGTCCCTGTGGCAGTGTCATGAAGCGAAAGACGAAGGTAATACAAGATGGTAAAAGCAGGGAATTATTTCTCGCTTATTTCTTCTTTTATGGAGTTTGGGAGTATTGAATCATGGTCTTAATATTGAAATATTTCACCAAAGTCCAGGGGACTCCTTTGGGTAATGAGGTTGAGCTGGCACCAGATCAGCTTCCAGATTTGATGCTTAGCATTTTGCTGGTAAGATGGCTAAAGGATTTTAATTTAGCCTCTATTCTATAGTGGCTTAAAAGAACAAAGGGTGGTGCGTTTTCCCCTTATACACTCAAAACCTACAGCTGTTTCTTGTGAAGGCTAAGCCAGGGCCACACATATCCAATGAGACTGACTAGAAATTTCTCCTGCCTTTGGGAAAGGATGACTGTCAGTGTCAGAAAAGCCAGGCTCTGCTGCCTAATCTGCAGTGACCTGTTAGAGGTCTAATAAGTCTTACCCCTGTGGGCTCTACCTGTAGAAACAATACTAGGTACTAGTTTAGGGGGCTGCTAGAAAATAATGAGGTCCTTTGAGGAGAGATCTTCTAAAATCACACATTAGTGATACTGAATTATTGAGAGTGACAAACTTTTTTATCTTCACCCATAATAAACTTTTTTTATCTTCACTTTGTTAGCAAATCCAAAGAAATGTGGAATTTTTAGTTTAGCAGATTCAAAAAGTAGAAAACAGTTTACCTTCCATATGACATATTTATATGCACTATTTAAGCTTTGAGGTGTAGCCCATTTAAATTTCTTCTTTGAGATTTCCAAATACATTATATCCATCTCACAATCCCCCCACGTACTCCAAATTTTGCATGGTTTACCATTGCCCATTCTGACCTCATTCTTCTTTCTAG
Seq C2 exon
TACATGCCTGCAACGTCAGCTATGCAAGGAGCCTACTTGCCACAGTATGCACATATGCAGACGACAGCGGTTCCTGTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000153250:ENST00000348849:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.292 A=NA C2=0.160
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCGTGTTAACTCCCTCAA
R:
CTCAACAGGAACCGCTGTCG
Band lengths:
191-1355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains