RnoINT0125309 @ rn6
Intron Retention
Gene
ENSRNOG00000008482 | Rbms1
Description
RNA binding motif, single stranded interacting protein 1 [Source:RGD Symbol;Acc:1307777]
Coordinates
chr3:46805982-46807249:-
Coord C1 exon
chr3:46807139-46807249
Coord A exon
chr3:46806063-46807138
Coord C2 exon
chr3:46805982-46806062
Length
1076 bp
Sequences
Splice sites
5' ss Seq
ACAGTAGGT
5' ss Score
5.67
3' ss Seq
GACCGCTTTCTCCTTTTCAGTAC
3' ss Score
9.55
Exon sequences
Seq C1 exon
GGTGCCGTGTTAACTCCCTCCATGGAACACACCATGTCACTACAACCTGCTTCTATGATCAGCCCTCTGGCCCAGCAGATGAGTCACCTGTCACTAGGCAGCACCGGAACA
Seq A exon
GTAGGTGGCAAATTAACATCGTGTTTCTGCCAATAGGAAAGTGAATTCAAGAAGCGTGTGTCATCCCCAGTGGAAGTCCAGGTTTGGGGATAACAGTGATTGTGTCTGACCCCTCCCCACCTGGCATTGATTTCCACAAAGTAAGATGGCACTCAGACAATTCTTCACTAGCTGATAACTTGTAGGTTCATCTCTGGATCCCTCTCGCTCACCCACACAGCACCCGCACATGTCCACGTCTAGCTTTTATAACCCGTGTTACAAGGTACAGGTCACAAAGGGAAAGATGCAGGCGTACATGGTGGGCAGGCAGGCAGTGCCTCCTCATTCTTTCTTCCTTGGTTGCAGTGTTGCAGCCCTTAATTGCAGTTTCCACAGGGACCTGTTCTTCTACACTGCAAGGGATGGGTTGGGTTACGAGGCTGAGTTCACACTGGGCCAGCTGGCAGATGGGTGTTTGTGGAGTATAGAATGTAAAAGATGGACGAAGGCATTCATTCAGTGCAGCCTGTGGCTGTGGTGTGGCTGTAAAAGACGAAGGGCACTGTGTTTTCCCTCTTAACTCTGAAAACCAGCCACGGCTTCTCATGAAAGTGAATCGGTAACGATACACAGCCCAGAAGCAGGTCCCAAACCCCACCTGCCTTGAGGAAATGAGACTGCCCATTGACTAAGTAGGGCTCCCTGGCCTCATCAAGAGTTCCTCTCAGGCCTCTTCCTGCCCAGATAGTATGAGGTATCAACTTGGGGAGTGACCAGAAAATAGCATGCCCTCTTGAGGAGAGATTTTTATGGAGCATTGATGATACTAAGTTACTGCAGATGAGAAACCTTAATGATCCTTCACGTGGGCAGAGTTTTTTGTGGATGGTAAGTTCAGAGAAACACAGGGTTTTCAGTTTGGTGGGTTGAAAACATTTTCCTTTGCCCTTCAGAAGATGTATGCAGTAGTCAGGCTGTAAGGGCTGCCCGTGTAAGTGCATTATTTGAGCCTTCTAAGAACTGTGTATCCTCCGCAGTAATCTGAACTTTGCATGGCCTGCCTTTGCATACCCTGACCGCTTTCTCCTTTTCAG
Seq C2 exon
TACATGCCTGCAACGTCAGCCATGCAAGGAGCCTACTTACCACAGTACACACACATGCAGACTGCGACGGTTCCCGTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008482:ENSRNOT00000011682:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.419 A=NA C2=0.278
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCGTGTTAACTCCCTCCAT
R:
GAACCGTCGCAGTCTGCATG
Band lengths:
182-1258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]