DreINT0125478 @ danRer10
Intron Retention
Gene
ENSDARG00000074023 | rbms1a
Description
RNA binding motif, single stranded interacting protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-4967]
Coordinates
chr11:10967151-10967456:+
Coord C1 exon
chr11:10967151-10967261
Coord A exon
chr11:10967262-10967375
Coord C2 exon
chr11:10967376-10967456
Length
114 bp
Sequences
Splice sites
5' ss Seq
ACCGTATGA
5' ss Score
2.71
3' ss Seq
AAAATTCTGCTCTCCTGCAGTTT
3' ss Score
7.74
Exon sequences
Seq C1 exon
GGAGCCGTTCTATCGCCCTCTATGGAGCACCCCATGTCACTGCAGCCGTCCGCTATGTTGGCTCCTCTCACCCAGCAGATGGGCCATCTCTCTCTGGGCGGCACTGCAACC
Seq A exon
GTATGATCCTCTCTCACAGATTGCGCTAACATGGCACAAGCGTATATGCTAATTAATAAGTAATATTAACACCTGTGTTTTTTAATAACGCCACAAAATTCTGCTCTCCTGCAG
Seq C2 exon
TTTATTCCTGCCAACACGGCGATGCCAGGAGCTTACATCCCTCACTACACCCACATTCAGCCCCCTGCCATCCCTCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074023:ENSDART00000064860:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.514 A=NA C2=0.370
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCGTTCTATCGCCCTCTA
R:
CTCAGGAGGGATGGCAGGG
Band lengths:
191-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]