MmuINT0132929 @ mm9
Intron Retention
Gene
ENSMUSG00000026970 | Rbms1
Description
RNA binding motif, single stranded interacting protein 1 [Source:MGI Symbol;Acc:MGI:1861774]
Coordinates
chr2:60593473-60594603:-
Coord C1 exon
chr2:60594493-60594603
Coord A exon
chr2:60593554-60594492
Coord C2 exon
chr2:60593473-60593553
Length
939 bp
Sequences
Splice sites
5' ss Seq
ACAGTAGGT
5' ss Score
5.67
3' ss Seq
GACCACCTTCTCCTTTTCAGTAC
3' ss Score
8.52
Exon sequences
Seq C1 exon
GGTGCCGTGTTAACTCCCTCAATGGAACATACCATGTCACTACAACCTGCTTCCATGATCAGCCCTCTGGCTCAGCAGATGAGTCATCTGTCACTGGGCAGCACCGGAACA
Seq A exon
GTAGGTGGCAAATTAATATCCTGTTTTCCTGCCAATAGGAAAGTGAATTAAAGAAGCCCATGTCATCCCCGGTGAAAGTCCAGGGTTTGGGGATAGCAGTGATTGCTCTGAGCCCCTTCCCCATCTGGCGTCGATTTTCGCAAAGTAAGATGGCACTCAGAAAAGTCTCGATTAGTCGATAACTTGCAAGTCCATCTCTGGATCCCTCTTGCTCACACACACAGCACCCACACATACCCGGGTCTAGCTTTTATAACCCATGTTACAAGGTTGGGTTATAAGGCTGAGTTAATACTAGGCCAGCTGGCAGCTTGGCATTTGTAGAGTGTAGAATGTAAAAGATGGACGAAGGCATTCAGCACAGCCTGTGGCTGTAAAAGGCAAAAGGCCCTGGGTTTTCCCTCTTATTCTGAAAACCAGCCACAGCTTCTCATGAAAGTGAATCCAGAACAATACACAGCCCAGAAGCAGGCCCCAAGCCCCAGCTGCCTTCGGGAAATGAGACTGCTGGAATTGACTAAGAATGGCTCCCTGGCCTCATCCCTAGTTCCTTTCAGGTCTCTCCCTGCACAGACAGTATGCGGTCTCAACTCAGGGAGTGACCAGAAAATAGCATGGCCACTTGAGGAGAGATTTTTATGATACATTGACACTACTAAATTACTGCAGATGAGAAACATTAATGACCTTCACATGGGCAAGTTTTTTTGTTGTTGATAAATTCAAAGAAACATGGGGTTTTCAGTTTGATGAGTTGAAAGCATTTTCCTTTGCCTTTCAGAAGATGTATACAGTAGTCAAGCTTTAAGGGCTGTCCATAGAGATGCATTCTTTGAGCCTTCTAAGTACTTTATATCCATCCCAGTTCCCCCACCACCCCAGTAACCTGACCTTTGCATGGCCTGCCTCTGCATAACCTGACCACCTTCTCCTTTTCAG
Seq C2 exon
TACATGCCTGCAACATCAGCCATGCAAGGAGCCTACTTGCCACAGTATACACACATGCAGACCGCGGCGGTGCCCGTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026970-Rbms1:NM_020296:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.305 A=NA C2=0.185
Domain overlap (PFAM):
C1:
PF072716=Cytadhesin_P30=PD(22.9=81.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: