GgaINT0046223 @ galGal3
Intron Retention
Gene
ENSGALG00000011132 | O73664_CHICK
Description
NA
Coordinates
chr7:23348203-23349031:+
Coord C1 exon
chr7:23348203-23348313
Coord A exon
chr7:23348314-23348950
Coord C2 exon
chr7:23348951-23349031
Length
637 bp
Sequences
Splice sites
5' ss Seq
ACAGTATGT
5' ss Score
6.05
3' ss Seq
CGTGCTGTCTCTCCTTCTAGTAC
3' ss Score
11.11
Exon sequences
Seq C1 exon
GGTGCTGTACTGACTCCCTCCATGGACCACACCATGTCACTACAGCCTGCATCAATGATAAGCCCTTTGACGCAGCAGATGAGTCATCTTTCATTAGGCAGTACTGGAACA
Seq A exon
GTATGTAGCAATTAAATACAAAATAGAACTTTTGCAAGTGGAAAATATTGTGTGTAGATAACAGTATGCATGTACATTTACATGTGAAAAAGTCCTCATTCGATAAAATATTAAGAACTGTCTCCATGTATGAATTAGATTCAGCATTATTTATTCAGTCTGTTAACTAGTCATATATAGTGAGTAAGCAAAATAGGCAAAGCGAATGGAAGGAACCCAGGAGGTGACTCCAGAGTTAGAGTGAAAAAGAAACGACAGTTGTTTTTATTCTTTGGGAGATCAGAGTTGCTGAAAGTTATACACAGCATGGAGCAAAAACTAGATGGGAAGAGGAGATGAAGGCCAGGCTCTAAACCAAAAGACTCTTCTGAGTAGAGAGTATTACTATATATGCGTATGCATAGAGATTAACAGAGAAAAATTCTTTACTTAGTTTTTGAAGGCTAAATTAGATATTAAAAAAAAAAAAAAAAACCAACATACACCTCAGTTTTCTGAAAAGGCTGTTAGTTTCAAACAGAAAAGTCTTTTCCTTGTGGGAAATGTTCAGTATCTACTACATGGTGTCATGACAGGTGTTTTGAATGCTCTTAGATTTTCATTGGACCTCAGCTTAACGTGCTGTCTCTCCTTCTAG
Seq C2 exon
TACATGCCAGCCACAACAGCTATGCAAGGAGCCTACATACCCCAATACACACATGTCCAGACAGCAGCGGTTCCTGTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011132:ENSGALT00000033119:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.419 A=NA C2=0.185
Domain overlap (PFAM):
C1:
PF072716=Cytadhesin_P30=PD(18.4=81.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTGTACTGACTCCCTCCA
R:
CTCAACAGGAACCGCTGCT
Band lengths:
191-828
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]