BtaINT0123467 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017830 | RBMS2
Description
Bos taurus RNA binding motif, single stranded interacting protein 2 (RBMS2), mRNA. [Source:RefSeq mRNA;Acc:NM_001034365]
Coordinates
chr5:57183700-57188523:-
Coord C1 exon
chr5:57188357-57188523
Coord A exon
chr5:57183759-57188356
Coord C2 exon
chr5:57183700-57183758
Length
4598 bp
Sequences
Splice sites
5' ss Seq
GTCGTAAGT
5' ss Score
9.9
3' ss Seq
TGCATATTCTTCTCCCTTAGATA
3' ss Score
9.27
Exon sequences
Seq C1 exon
CCATATGTGTCGTTGTCTCAGCAAATGGCACCACCTAGTCCAAGCAGCAGTACCCCTAACAGCAGCAGTGGGAGCACTGCACATGACCAGCTGAGTAAGACCAACCTCTACATCCGGGGATTGCAGCCAAGCACTACTGACCAGGACCTAGTGAAGTTGTGTCAGTC
Seq A exon
GTAAGTTGGGGCACACGTGGATAGGTTTCCAGGGACAGTACAGATTTGGTGATGCTGGCTTCTTACCAGATACTCTTATCCTGAAATGCAGTATTATTTTGCTTCTACCCCTATTTTCACAAGGTTTCTCAGCAACCCCTCTGAAAGAAATTCTATGTACTGCCAATATATAAAACTTTCATGTGTTTCTCGGAAAAAAGCCAGATCAGGCTGACTTGGAAAGCCTAGTTAGCATATGAGTTTGTTTCCGGCATGTATCCAGAGCTGATGGTCTTAGTGGAAAGATTTCTGTCCTTACACCTTGAATAGAAATGCTCAATATCTCTGAAGATATTGATCAGAAGATAGAGTTGGCAGTGAGGATAGAAGAAAGTGGGACTAAATTGAATTATGCTCTTAGGAGAGTTTCTGCTGCTAGAGATATTTCCAGGGACCCAGAGGGGCCCTCAAGCTAGTGGATAAAGAAGAATATGAAGAAAGAGTTGTCAACTGGTATTTACTCCCTAAAGATCTTAGGGGTCCTTTTGCATAGACTTGAGTCATGAGGTAGAGATAACTACCATGGAATTAGCCCAGTTAGGAAAGCCGGAAAAATTGCACGCATGCAGAGATGCCAGCTCAATTCTATGTAGCAGAAAAATATGTGTTTCAGATCATTTATATGGGGGAGTGATTGGAGGCTGGTAGGATGGGAGTACTAACAGAGAAGGAGAAATTTATTTCGAGTTTGTTTATTTGGGTGTGCCAGGTCTTAGTTGCGGCAAGCAGGATCTTCATTGCAGCGCACGGGGTCTTTAGTTGCAGCACGGGTTCTCTAGTTGTGGCCTGTGGGTTCAGTGGTTGCAGCACTCAGGCTTAGTTGCTGTGAGGCATGTGGGATCTTAGTTCCCCTACTAGGGATCAAAGCCACGTCACCTGCATTGGAAGGTGGATTCTTAACTTCTGGGCCACCAGGGAAGTTCCTAAATTTACCATTGTTTAAAACTGTTGAAGTATAACAAGCATACAGAAAAGTGTACAAATCATAAGTGCTTACAGAACAGTGAATTTTCATAAAGTGAACACATCCTTGTAAGAGTCCCTTGTAACGCAGATCAATGGAACATTATCAGCTCTTCAGAAGCCCACGTCCCTGTGACAATCTCTCTCCTACCCTCAAAGGTATCTACTGTTTGACCTCTGAATGATTAATGTGGCTTGTTTGAACTTCTTATAATGATATAGCACATACCATTTTATGTCTAGTTTCTTTTTCTCAGTGTTGTTTGTGAAATGCATCTACATTGTTGCTTGTAGCAAAACTTTGTCCATTCTTCTTGCTCTCTAGAATTCCATCATAGGAATATAGCACAGTTTATTTACTTGTTCTACTGTTGCTAGATATGGGGTTGGTTTCCAGTATGTGACTGTTATAGATATGAATAGTGCTGCTGTGAATTTGAGCAAGACTTTTGTTGCATGTGTATATACATGTATGTTACTAGGAGTAAAATTGCTAAATTATAGGTATACATTTGTTCAGCTTTTGTAGATACTAGTAAACAATTTTCTGAAGTGGTCAAACTGACACAAACTCCCATAACAGTATATGCGTGTGCCAGCTGTCCCAAATCCTGGAGAGGCTGAACATCCTTCCCCCAGAATGTATGAGGCCTCAGAGGTACTCTGTAAATCCCTTAGTCTTCTGAAGTTGTGGTTTTGGAATTCTCTTTGCACCAGGCTGCACAGAATCAGTCTCTAAAGGCTGGATATGTGTATAACACTGGATCCTTTACCTCAGCTTACCTTGTTAGAAAGATATTTAAATGAACTTAGGGGACTTAGTCTAGGACTAGTAATTTTTTGAGGGAATAGAAAGTGGCCAGAATATCTTTAGGAGACATAAGAGACGTGGGTTTGATCCCTGGGTTGGGAAGATACCCTGGAGGAGAGCATGGCAACCCACTCCAGTCTTCTTGCCTGGAGAATCCCTATGGACAGAGGAGCCTGGCAGGCTACAGTCCATGGGGTTGCAAAGAGTCGGACATGACTAAAGTGACTTAGCATATGAAGGAAGAGAGTACTGTATCAATCTAGTTCCTTGATTTCTCTATCCTTTGTTTCTTGGACTAAATATAGTGTGCTACAAAAATCAATTCTGTGACTCCACAAGACAGAGGAAAAGCTCAGTTCTGCTTTACTCTACTTTAAGGCTCATTTGGTCCTTACCGATAGTTGCCTTACCTTCTGTTGTGTCTGAGGGATGAGAATAATAAGGATGGGAGCATATAGGATGGGAGTAAGGAGCCCAGGAGGGGACCATACGTAGGAGTGCGGCAGAAAAAAAATAGGTGCTAGATGAGTTATGACGAAAGGGAAGCTGAGAAGAGCAGGTGGGTGGAACCCTCACAGGCATGTGAGCTGGGAGATAAACCTCTCTGTGAATGGTGTTTCCCATGCATAGAAGGACTTCCTGCCTTTGTCCCAGCTATCTCTCTAGGTTGTAGGGGAAGTACGCTGGATCCTAAGCCCTGGTGGGCAGGAAAGAGAGGCGTGGAGTCTGGAACTGGAACTCCCGGTTCTCTCTTGGAGGGCTCCTTCCACGGAGGAAGCAGCACGATCCAGCTGTTGCCAGCTGCAGTGGAAACTCTGAGCTCAGAGTCTCAGGCTGCTCAGACCACAGCGAGCCCCACCCTAGGGCCTGGGTGGAGATAGCAGCATGTGTGTTCTCAAGCTCGCAGTCTCCCTCATCCCTTCTCTTGCCTAAATTTGGGGAAGAATCCAAGTATGCAGCCCAGAGGGTTAGGATCACATCTATTCTAGCCTCCAGGGCCCTACTTGGCTTATTCTGTCTAATCCGAGGGTCACAGAGCCCCACTAGAACAGTCAGGGGTTGTCAAGGAGCAAAGCAACTACATCAATCATCATCTGTTCTTTAGGGATGGAATGGGAGGAAAAGTAGAAAAAAATCCTTGTTTCAGGTAATTCAGTCCCTGCCAACTGTTTTCCAGTTAAATTTTATACTCCTGACTTTGTTAGTGATTTTCTTTTCTGTCTCTCTAATATGGTTCACCCTCCTGGAGTAGAATGTAGAGATTTCTTTCTAGTAGAACACTTCTAATATATCCCGGAACAGTGGTACTCCACTGTTCACAAGTTTGGGGAACTCCACAGGACCCCACATGGCTAAAGTATAATTTTAAAAGGTTGAAGAATATAACTCTCCTACAAATATAGGTGAGCCTATGCCAATATTTACTTTACTCATTAATGAGGGAACTAGCAGAATGGTAAAATGAGTTCAAAGAGCATTTGAGAGACTGAGTATCGATAGGTACTGAAGGAAGAAAGTAAATAAGATTACTAGGTTACAGAGAAAAGTGCTTCATACCCTTTAGGACAGTAAAACAGTAACCTTTGGGATTATCTTTTCTAATGGACAAAAATTACTTGTATCTCTACTAGATAAAAATCTACAAGTTAATATGTATCTTCATAAAATCTGAGCCTCATCAGTAATAAATAGCAACCTAAAGAAACATCCTTCTAGATAATAGAATATACCTTGAATGGGCCTTGTAAACAATGTTCCAGAGTGACATTGAAAGAAGGTGAAATCCTTATTCTGCCTTATCAAGTTTTGGGTAATTTTCTTAACACAGCTATTGCATTTAATCTAATGCCCAGTCCCACTCCCTAACACACTGAAATCTTGACAGGTAGAAATCAGGGAATTCCTTGTCAGTCCAGTGATTAGGACTTGGCATTCTCACTGCCAGGGCCCTGGAATCAGTCCCTAGTTGGGGAACTAAAATTCCATAAGCCACATGGCACAGCCGAAAAGAGAAAGAAGTCTTAGACACTAAAGCCCAAAAGAGAGCCATTTGGTTAAATGTTGAGGTCCTTTGGATATAATGTTATAATAATAGCAATTAACAGTATTCAGGTGTTTTTTGGTAGACATTGGTGCTTTGTATTCATGATCTCATTTCATATTCCCAACAATCTTTTCTCCATTTTACAGATGGTGAGTCTGAGGCACAGAAAGATTAAATGACTTGTCCAAGATCACACATAGCTAAGTGGCAGAATCAGGATTTGAATAAATGCAGTTTGGCTTAAGTTGACCTTCAGTCAGGGGGCCAGTCGAAGAGTGAGGAGTGGGACATTAGAGAAGAGAAATAGATTTTCATGGGAGAAATGCTGTTTGTCCAAAGGAAGATAAGTAATATCAAGGATTACTTTTAGTCTTCAGGGAATTCTTGCCAGAGCTCTGCCCTTGCACACTGATGAATGGATGTCACCAAGCTTCTTTCCCCCCAAAAAGACAGTAGTCTCTTTCTAACTGGTATCTGAGTCTTATTTGGGGGAGAAGAGAGAAATGCGTTGACAGTGTAGGGACTACAGTTACCTTACTTCTTGTAGATGCCTTTGGGGAATAGGTTTATATGAGAAGTGTGACATTTTAAATTCATTTGTTCTTATTGCTAAGGATTGAGCACGACAGTTTTTCCTAGTGGGAGTGAAGACAGGGCATGGATTCCTCTAGATGTCGCAGTCTCTGTCCTTGTCTAAACCCCTGCCCCCAGATTATCACTTTGCATATTCTTCTCCCTTAG
Seq C2 exon
ATACGGCAAGATTGTCTCCACTAAGGCCATCCTGGACAAGACCACAAACAAGTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017830:ENSBTAT00000023705:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.643 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF062597=Abhydrolase_8=PU(43.6=85.7),PF0007617=RRM_1=PU(29.9=35.7)
A:
NA
C2:
PF062597=Abhydrolase_8=FE(18.2=100),PF0007617=RRM_1=FE(29.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]