MmuINT0132946 @ mm10
Intron Retention
Gene
ENSMUSG00000040043 | Rbms2
Description
RNA binding motif, single stranded interacting protein 2 [Source:MGI Symbol;Acc:MGI:1861776]
Coordinates
chr10:128146602-128151355:-
Coord C1 exon
chr10:128151183-128151355
Coord A exon
chr10:128146661-128151182
Coord C2 exon
chr10:128146602-128146660
Length
4522 bp
Sequences
Splice sites
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
3' ss Seq
TGTGTTTTCCTTTTCCTTAGGTA
3' ss Score
12.34
Exon sequences
Seq C1 exon
CTATATGTGGCTCAGCAAATGGCACCTCCAAGTCCAAGGAATAGCACCCCCAACAGCAGCGGCGGAGGCGGCGGCGGGAGTGGTGGGAACGACCAGCTGAGCAAAACCAACCTGTATATCCGAGGACTGCAGCCAGGCACCACTGACCAGGACCTTGTCAAGCTCTGTCAGCC
Seq A exon
GTGAGTTGCAGCCCCAATACAGAGGCTTCCAGGGATAGCACGGATTCCCAGGCGCTGGCTTCTTGCCACATGCTCTTAGGGAGAATTGCAATAGTATTACACTTCTACCCCACAGTCACAGGCACATTCCAGGGCGCTCACGTGCCGCTCTTTTGAGTTTTGTTGTTTTGAGTCAGCATCTCATGGATCCTAGCCTGGTTTCAGATAAGATCAATGTAAGGGAGAAAGGGTTTCTTTGCGCTCAGAGCTTGATCTTCTCCTGGGAAGTCCAGGTGAAGGAGCTTGAGGAAGCTGGTCATGTCACATCCATGAAAGGGAAACGGCTGCTTGCTGCTGTGGCTCAACTCCCTTTCTGCATTTCCTAGTCCTGGATTCCAGCCCAGGACCTCAGTGCCACAGTGGTTAAGGCCCTCACAGGCATGCTAGGTGCCTGTCTCCCAGGTACCTCAGATTCTGTCAAACTGATAATTACCACTGACCCTGACATAGTTTGACAGAAATATCCCCTTCATCTCCATGGGGTGAATGTATTTTTTTAAAGCAGGGTATCATGCAGTCCAGGTTGGACTTGAACTCCTTGTCCTTCTGTGTCTACCTCTGGGGGTAAAGGCATTTCCCACCCTACCTGGCTATAGCAGCTTTTTATTTTATTCATTCATTTTAATTTCTAATCCATCTTTATTTGTATGCATGTTTATGTGCTTGTGTGAGTTTATGTGCACCATATGTATCTGCAGCCGGAGGGCATCAGATGCTCTGGAACTGGAGTTATAAGCAGGTGTGAGCCACTTAATGTGGATGCTGGGAATTGAACCCAGGTCCTCTGGAAGAGTAGCCAGGGAGTGCTCTTCACTGCTGAGCTATCTCTCCATCTGTTCTTGTTTGTTTATTGAGTCGTCCATTCTGTTGTTGAAAGTATTTGTATTGTTGCCAGTCTATGGCTATTATGAATGCAAACTGTATGACAGAAACTTACCCCTTGGTGTGCGTGCATGCCTGTGTCAAAATCAATCAAAGAAGCAGGGCTATAGTGGCGCCCAACTTTAATCCCAGCACTTGGGAAGCAGAGAAGACAGGTGGATCTCTGAGTTCTAGGCCAGCCTGGTCTGCAGATGGAGCTACGGGACTACACAGAGAAACCTAATCTCAGAAATAAAATAAAATAATAAAATAAAATAAAGGAAGAAACAAACCAGTCAAACAAAAATGTTGGAGTAAGTGCAGGGAGAAGGCATGGGTTGGGTGGAGCCTGATAGAGGAGAGGGAGGGGCCCAGCCTATCTGAGAAGGGCGGGCTCTCCTGCTCAGAAGGACTTCCTGCCAGTGTCCCCGGGATCTCTTCCTGGGTTGCTGGATCCCAAACTCTGGTGGGCCGGAAGGGGAGGTGTGGCCTGGGACTAGAACTTCTGGTTCTCTGGAAGGGGCTCCTGTGGAGGAGGAAGCAGCACTGACCCAGCTGTTGCCAGCTGCAGTGGAAACTCTAGCTCAAAGTCTCAGGCTGCTGGGCTGCAGCAGGCTCCACCCTGGGGCCTTGATGGGGATAGCAGCTCGAGTGTCCTCTGGCCGACAGTCATTCCTTATGACTCTTTGCCTCAAAAGACCCAAGGACCACCAGTCCCCGCCTCCTTTTTCTTTTCTTTCTTTCTTTTTTTTTTCTCTCAGCCTCCAGGGCATTCTCCAGCTTATTTTGTCTAATCCTCTGGGTTCCGAAGCTGCACTGAAAAAGCTGAAGGGAGAGAGGCAGCCAGGGGCAAAAACAAACTAATCAGGCATCCATGTTCTTTAGGAATAAGAGGATAGATTTTTTTTTAATGCTTTCTGGAATATTAATCTCAAATTTAGTTTCTGCCAACTGTTTCTCTTCAGCCCTTGAATTTCTGACTTTGTTCAGGGCTGCTGTTCTGTCTCTGACATTTTCACACTTCTGGGATACTTTTTCCTTGTAGGATACTTCTGACCCAAGATCTGTACTGCTTCATGACTAGAGCTCTGCCAGCTGTCCAGGCCTCTGCTGCCAACAGGGTTTTCCAAAAAGCTGGAAAACACAAATCTCATCAAATACAAAGTGAAAACTTGTCACAGACTAATTTAACTCATTCCTAAAGGAGACAAGATGGAAAAACCAGGTCAAAGAGCACGAGGAGATACTTGTTGGCACTGAAATGTTGGGATAAGGTTGCCGTGATGAGGCCAGAACATAGGAAGCCACGGGACTTGTCTGAGATCAGTTGTACTAGAAAGTAGCAGAGTTAGGATTTGAGCCGAAGACATTTGGATCAGGCTGGCCTCATCAAGGGACCAGTAGAGCCTTGGGTGTAGGGGTCAGAGGAAGCATTGTCGTGATGATGATTTAAAGATTTATTTATGTATATGAGTACACTGTAACTGTCTTCACACCAGAAGAGGGCATTGGATCTCATTACAGATGGTTTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCCAGAAGAGCAGTCAGTACTCTTAACCACTGAGCCATCTCTCCAGCCCCTTATTATTTTTAAGATGGTCATCTTTAATTGTATTATTTATGAGTGTGAATATTTTGCCTGCATGTATGTCTGTGCACTGTGTGCATGCATGCATAGTGCCCACAAGACAGTTATGAGCCACCATGCGGGTACTGAGAATCAAAACCAGGTCCTAGTGTACTTAGCTGCTGAGTCATCTTTTTGGGTTTATTTTTATTATTTTTAATAGGATGAATGGTGTTTGTCTAAAAGAAAAGTAGAATCAAGAATTATTTTTGCGAGCCGGGCGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTTGAGGCCGGCCTGCTCTACAGAGTGAGTTCCAGGATAGTCAGGGCTACACGGAGAAACCCAGTCTCAAAAAAAAAAAAATTATTTTTGCTAGGTGGGTGGTGGTTGTGTATACCTTTAATCCCAGCAGAGGCAGGTGGATCTCTGGGAGTTTGAGGATAGCCTGGCCTACAGAGTGAGTTTCAGGACAGCTAGTGCTACAGAGAGAATCAGGACAGCTAGTGCTACAGAGAGAAACCCTGTCTTGAAAAACTGAAGGAAAAAGAAAAGGTTATTTCTGATCCTCAAGGAATCCCAACAGAGCTCTCAGCCTTCAGACACAGGCTTTATGTGTGGGCCAAGCTTCTTTCCCCAAAAGTGTCTTAAAATGGACAAATGTGTTGGTATTGTAAGAGCTGCAGTCACTTTCAGGTGGTGCCTTTGTGGGGTTAGGGTTATATTAAGGACACTGTGACAGCTGACCTTATCGAGGATCACTATAGTGACTTTTCCCTTTGTGAGGACAATATCCCTGACAAACAGCAATTTCAGTGAAGAAGACTTTGTGTTAGCCACACTTTGAGGGGAACATACAGATCATCATGGTGGGTAGGATCTGTGGCAAGAGATGGTCACACTGATGTCAACAAAGTAAAGGGCAGCCAGGGAGGTCCAGGCTGTAAAATCCCTGTGACCCATTCACTCCAATGAGGCTGTACCCCTTACAACAATGTCAGCAGCTGGGGACCAGTCCTCAGCCTCGGGACATATGGGGACATTTCCAATGAAAACCACACCAGCCCTTGAGATTACTGAAGTACACATCCAGGTGTGCCGGGGTCGATAAAAGGAAGCAGGGAGATCTTCCATGAATATAGGCCGGAAGAGAAGGGGAAATAGATGTTTATATCCCCCTCCCTCCTTTCCCCATGCTAGGAGCAGTGCTTCATCCTCTCTGCTGTGCTGGACTGAAACCATGAGCCAAAATCAAAGTGTTTGTTTGGTCATTTTGTCGCAGGGATGAAAATTAACACAGTAGTTTGTTTTGTTTGTTTGTTTTTAGACAAAGCTATATAATCCTTATTGTCCTAGAACTCATTATATAGACCAGGCTAGCCTGGTTCACCTGCCTCTGCTCCTGAGCAGAGGGATCAAAGGTGCCCGCCACTACTTACTGCACAAGTAGCATTTTAAATTGACTAAGGGTTTTTTTGTTTTGTTTTGTTTTTTGTTTTTTTTTGTTTTTTTTGTTTTTTTTTTTTGTTTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCGCCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAGGCATGCGCCACAACGCCAGGCTGGGTTTTTACTTTGTTTCCATGTAATGACTAGAAAAACTAGCGGAGAAAGAAAGGGCTTGGAGTAATCTAGATGATGCCTTAATCTCTATCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCTGATTCACCTCTGCACCTCTGCCTCTACCTCCTGAGTGCTTGGTTCAAAGGTGTATGCTACTGCACCTGGCTCTTCTCTCTGCAGTTTGTAAGCCCCGCCCCGAACAGCCCCCACCCCCACCCCCCCCCAATCACAGATCATCACCTTGTGTTTTCCTTTTCCTTAG
Seq C2 exon
GTATGGCAAGATTGTCTCCACTAAGGCCATCCTGGACAAGACCACAAACAAGTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040043:ENSMUST00000099139:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.715 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PU(29.9=34.5)
A:
NA
C2:
PF0007617=RRM_1=FE(29.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types