RnoINT0125323 @ rn6
Intron Retention
Gene
ENSRNOG00000003076 | Rbms2
Description
RNA binding motif, single stranded interacting protein 2 [Source:RGD Symbol;Acc:1304813]
Coordinates
chr7:2567032-2571443:-
Coord C1 exon
chr7:2571283-2571443
Coord A exon
chr7:2567091-2571282
Coord C2 exon
chr7:2567032-2567090
Length
4192 bp
Sequences
Splice sites
5' ss Seq
GCCGTAAGT
5' ss Score
10.11
3' ss Seq
AGGTTTTCCCTTTCCCTTAGGTA
3' ss Score
10.44
Exon sequences
Seq C1 exon
CTGTATGTGGCTCAGCAAATGGCACCTCCGAGTCCAAGGAACGGCACCCCTAACAGCAGCAGCGGGAGCGGTGGGAACGACCAGCTGAGCAAAACCAACCTGTATATCCGAGGACTGCAGCCAAGCACTACTGACCAGGACCTGGTCAAGCTCTGTCAGCC
Seq A exon
GTAAGTAGCAAATCCTAGTACAGAGGCTTGCAGGGTGGCACAGAGCCCAGTCACTGGCTTCTTGCCACATACTCTTAGCATGACTTGCAGTACCATGCTTCTGCCCCGAGGTCTCGGCGCATCCCGGGACGCCCACGTGCGGGGCTTTGGGTTTGTTTTTTCCGCTTTGTTGTGTTGAGACAGTGTCTCGTGGATCCTAGGCTGGTCTCAAACGAGATCAACATAAGGAAGAAAGGATGTCTTTGGGCTCAGACTGTGACCTTCAGTCCATTATGCTAGGGAGTTCAGGTGAAGGAGCTTGAGGCAGATGTCACATCACACCCACGACCAGGAAGAAAGGAAAATGGCTGCTTGCGGCTAGTCAGCTCCCTTTCTGCATTTATGTCATCCTGGATCCCACAGTGGTTAAGGCCCTCACAGCATGCTAGGTGCCTATCTCCCAGGTGACCTCAGACTCTGTCAAGTTGACAATTAACATGGACCCACAGAAATATTCACTTAATCTCCATGGGATGAATGCTTTTTTTTTTTTTTTTTTTTTGGGTCTTTTTTTTGGAGCTGGGGACTGAACCCAGGGCCTTGCGCTTCCTAAGCAAGCGCTCTACCACTGAGCTAAATCCCCAGCCCCGTATTTTTTTTTTTTTTTAACAGGGTATCATGTAGTCCAGGTTGGACTAGAACTCTTTATCTTCCTGTGTCTACCTCTGGGGTTAAAGGCATTTTCCACCATGCCTGGCTATATAATATTTTATTCATTTTAATTTGTATCCATTTTATTTACCTGCATGTTTATGTGCTTGTGTGAGTTTATGTGTATCTGAAACCAGCAGGCATCTGATGCTCTGGAACTGGAGTTACAAGCAGGTGCAAACCACTAAATGTGGATGCTGGGAATTGAATCCGAGTCCTGTGGAAGAGCAGCCAGTGAGTGCTCCTGACTGCTGAGCCATCTCTCCAGCCCCATACTATCTTTCTTGTTTATTTGTAGAGTCGTCTAGTTTGTTGTTGAAAGTATTGGGATTGTTACCAGTTTATGGCCACTAGTAATGCAAGCAGTATGCTGGAAACTTACCTCCTGGTGTGTGTGCCTGCCTCTGTGTGTGTGCATGTGCATGTGTGTGTGCCTGTGTGTGCGTTCGTGCCTGTGTAAAAATAAATCAAACAAGCGGAGCTATGGTTGTGCACAACTTCAATCCCAGCACTTGGGAGGCAGAGAAGACAGGTAGATTTCTGAGTTCCAGGCCAGCCTGGTTTACAGATCGATTTCCCGAGCAGCTAGGACTACACAGGAAATCCTATCTCAGAAATGAAATGAAATAAAAAAAGGAAGAAACAAATCAGTTAAATAAAAATGTAGGAATAAGTGCAGGAAGAAGGGAGATGAGTTGGGTGGATCCTGAGGGCGGGGAGGAGGGCCCCGCCTCTCTAAGAAGGGCGGGTTTCTCCTGCTCAGAAAGACTTCCTGCCTGTGTCCCAGGGATCTCTTCCCGGGTTGCTGGATCCCAAACTCTGGTGGGCCGGAAGGAGAGGTGTGGCCTGGGACTGGAACTTCTGGTTCTCTTGAAGGGCTCCTTCTGTGGAGCAGGAAGCAGCTCTGAGCCAGCTGTTACCAGCTGCAGTGGAAACTCTAGCTCAAAGTTTTAGGCCGCTGGGCCACAGCAGGCTCCACCCTGGGGCCTTGATGGGGATAGCAGCTTGAGTGTCCTCTGGCCAACAGTCACTAATTATGATTCTTTGCCTAAAAAAATCCAAGGACCACTGGTCCCCACCTCCTTGTAATATGCTCTTTCCTCGACCTCCAGGGCACCCCCAGCTTATTTTGCCTAATCTTTGGGTCCCAGAAGCTCCACTGAAAAAGGACAGGAGTGAGGTGGAAGCCAGGGGTTAAAAACAAACTAATCAATCATCCATGTTTTTTAGGATAAGAGGATAGATTTTTTTTTTTTTAAATGCTTGTTTGGAGAGTTAATCTCACATTTAGTTTCTGCCAACAGTTTCTCTTCAGCCCTTGAATTTCTGACTTTGTTCAGGGTTACTGCTCTGTCTCTGACATTTTCACACTCCTAGAATACAATGTAGCTGGTTTTTCCTACTAGGATGCTTCTGATGTAACCCAAGATCTGCACTCCTTCACCACTAGAGCTCCGCCAGCTGTGCAGGCCCCTGCTGCCAACAGGGTTTTCCAAAAAGCTGGAAAACACAAACCTCATAAAGTACAGAGTGAAAACACATCACAGACTAATTTAACTCATTCATAAAGGCAACAAGATGGAAAAACCAGGTCAAAGAGCACGAGGAGTTATTAGTTAGCACTGAAATGTTGGTGAGGTTTGGACACAGGAGGTCACAGGACTTGTCTGAGATCAGTTGTACTAGAAAGTAGCAGAGTTAGGATTTGAGACAAAGACATCAGGATCAGGCTGGCCTCCAGGTAAGGGATCAGTAGAATGTTGGGAGTAGGGAATCAGAGGAGGCACGTTTATTATTTTTAAAATGCTCATTTTTAAAATTGTATTATTTATTGTGTGGATGTTTTGCCTGCATGTATGTCTATGCACCATGTGCATGCATGGTGCCCGCAGACAGTTAGGAGCCACCAGGTCCTAGTGTTCTTACTTGCTTAGTCTCTAAATCTCTTTAGATTTATTTTTATTTTTATTTTTTTTTCAGAGCTGGGGACCGAACCCAGGGCCTTGCGCATGCTAGGCAAGCGCTCTACTGCTGAGCTAAATCCCCAACCCCCTATTTTTATTATTTTTAATAGAATGAATGATGTTTGTCTAAAAGAAAAGTAGAATCAAGAATTATTTCTGCTAGGTGGACGGTAGTGGTGCACGCCTTTGATCCCAGCACTCCGGAGGCAGAGGCAGGTGAATCTTTGGGAGTTTGAGGCTAGCCTGGTCTACAAAGTGAGTTTTAGGGCAGCCAGAGATCCACACAGGAACCCTGTCTTGACAAACTGAAGGAAAAAGAGAAGAGAAGAGAAGAAAGGGAAAAGGAAAGAATTATTTCTTTGTTCCTCTAGGAACTTCACTGGAGCCCCGCCTTTAGGCACGTGCTTTATGTGGGTGTGGCCAAGCTGCTGTCCCCAAGAGTGTCTTTGGGGACAGATGTGTGGTACTGTGAGAGCTGTGGTCACTCTTGTGGTGCCTTGTGGGGTTAGGGTTATAATAAGGACACTGTGACAGCTGACCTTATTGATGAAGTTAGACTGAAAGTGCTGTAGCGACTTTTCCCTTTGTGAGGGCCACACCCTGTCAAACAACAATTTTAGTGAAGAAGGGTTTATGTTAGCCACAGTGTGAGGGGAACAGACCATCATGGTGGGTAGGATCCGTGGCAAGAGTGTGGATGGTCACACTGACGTCAGCAAAGCAAAGGGCAGCTGGGGCGGGCTAGGCTGTAAAATACCTGTGACCCATTCACTTCAGTGAGGTTCTACCCCTTAAAACAGTGTCAGCAGCTGGGGACCAGTCCTCAGTCACAGGTAGTATGGGGACATTTCCAATGAAAAGCACACTAGCCTCTGAGATTATTGGTACACATCTGGGCATGCCAGGGTCAATAACAGGAAGCAGGGAAATCCTCCGTGAATATAGGTGGGGAGAGAATGGACAACAGATGTTTATTTTCTCCCTCCCTTCCCTTCCCCATGCTGTGAGCTGAACTTCGTCCTCACTGCAGCGCTGGAGTGAAACCCGGAACTGAGATCGTGAGCCAAAATAAAAAGTGTGTATTTGAGGCATTTTGTTGCAGGGATGAAAATTAACAGTGTTTTTTTGTTTTGTTTGCTTTGTTTGTTTTTAGACAAAGGTTTATAGGCCTTATTGTCCTAGAACTCATTATACAGACCAGGCTGGCCTCTAACTCAGACATCCCCCTGCCTCTTCTGAGCACTGGGTCAAAAGTGTGTGCACCACTTACTGTGCAAATGGTTTTTACTTTGTTTCCATATAATGAGTAGAAAGACTTGTGCCACTAGGAGCAGAGAGAGAGTAAGCTAAATGTCTCAGTCTTTGTCCTGGCTGTCCTGGAACTCGCTCTGTAGAGCAGGCTGGCCTCTTGAGTCACAGAAATCCCCCTGCCTCTGCCTGCTGAGTGCTGCTGGGTTCAAGGGCGTGCGCCACCTCTTCCTTGTGCAGTTTATAATGCCTGTCCTGATCGTCACCTTGAGGTTTTCCCTTTCCCTTAG
Seq C2 exon
GTATGGCAAGATTGTCTCCACCAAGGCCATCCTGGACAAGACCACAAACAAGTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003076:ENSRNOT00000048848:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.648 A=NA C2=0.036
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PU(29.9=37.0)
A:
NA
C2:
PF0007617=RRM_1=FE(29.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]