BtaINT0124463 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008198 | RGL3
Description
ral guanine nucleotide dissociation stimulator-like 3 [Source:HGNC Symbol;Acc:HGNC:30282]
Coordinates
chr7:17008969-17010721:-
Coord C1 exon
chr7:17010607-17010721
Coord A exon
chr7:17009085-17010606
Coord C2 exon
chr7:17008969-17009084
Length
1522 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TCTTCTCCATGCTTGGCCAGAGC
3' ss Score
4.94
Exon sequences
Seq C1 exon
CTCACTAGTCAGGACAAGGCCCCCACCGTGGTCCAGCGAGCCTTGGAAAAACACAATGTGGCCGAGCCCTGGGTCCAGGACTATCAGCTCTTCCAAGTCCTTCCTGGGGACAGAG
Seq A exon
GTGAGTAAGGACAGCTTGGAGCCTGGGCTAAGGGGCAGTTGGCTGGGGAGGATGGCAGGCTGACCAGGGTGGTTCTGGAACCGAGTAGGGGTGAGATGCAGCAGGGTGGGGTTACGAGGCAGAAAAATATTGATGCCTTCCTTAGGTGGGATCATGAGGTTGTCCTAGCTCAGTGTGAGGGAAGGGGGCACCAAAAGGGTCTTCCTAGGATTTATAGGGAAATGAGATTATCTGGGAACCAGTGGGAGAAGGAGTATAGAAGGTCATCTGGGTTTCGCTTTGTAGAATTGTGAGGTTGTTTGGGCTCAACTTCATGTAGCACAAGACTGAAGGGGGGGTCTGGGCTTGAATCTGAGGCGAAATGAGTTTGTCCAAGTTTGGTATTGGGGACTATGAAGTTACTTGAACTTGGCATGGGAGAGGGCCACGTGGTACTGAAATTCAGGGTAGGAAACGAGATTGTTCAATGTAAAGTGAGTAGAAAGTTGTCTGCTTTTAAAGGGAGAGAGGTAACAGGGAACTATATTGAATATCCTGTGACAAACCATAATTGAAAAGAAAATGTAAAAGCATATATGTGGGCTTCCCTGGTGGCTCAGATGGTAAAGAATCTGCCTCAGTGCAAGAGACCAGGGTTCAATCTGGGTTGGGAAGATCCCCTGGAGAAGGGAATGGCAACCCACTCCAGTATTCTTGCTTGGAGAATCCCATGGACAGAGGAGCCTGGCAGGCTACAGTCCACAGGGCTGCCACACAACTAAGCGACTAACAGTTTCACTTTTTTCACATACATATATATGTATGAATAACTGAGTCACTTTGCTGTACAGGAGAAATTAACAACACATCGTAAATCAACTGCACTTCAATTAAATGTTTTAAGAAATGACAAATATGTATATAAAGGAGGGAGAGGCAAGACATTGACATGCTAGGGAATTCCCTGGCAGTCCAGTGATTAGGACTCCACGCTTTCACTGCTGAGGGCCTGGGTTTGATCCCTGGTTGGGGAACTAAGATCCTGCAAGCTGTGTGATGCAGCCAAAAGGAAAAAAAGAAAAAAAAGACTGACATGCTAAAGGGATATATGAGGGTGTTCACATGACAAGTGTGAGGGTTGTACAGGCTGGAAGTGGGAAGTCCGAAGTTGTCCAAGTTCATGTCCTAGAGCAGCATGAACTTGGCTGGGAGTTGGCTGCAGGGGGGAGGGTGGGGTGAGCAGGACGTTGATTGGGGTGGGAGGCCTGACTTTGCTCAAGCTTCTAGTGCAGGTTGTCTAGACTCCAGGGGAATAGGAGGAGGTTGCCCAGGTTCACAGTGGGGGAGACATGAGGTTGTGCAGGCTTGGAGTGGGAACTTGTCTAGATTTCCAATGAGAGGGGAATGAGGTTGGCTTAGCACTCGCTGAAGGGATCCAAGATTGTTCAGGTTGCGTGGTGAGTGGTAGAAGGTTCCCTAGGTCCTTTGTGGGGGAAGTGCCAGATTGTGTGAGCTTTTCACCATCTTCTCCATGCTTGGCCAG
Seq C2 exon
AGCTCCTGATTCCTGACAACGCCAACGTGTTCTATGCCATGAGCCCAGCCGCCCCTGGAGACTTCGTGCTGCGGCGGAAGGAGGGGGCCCAGCATACAACCTCAGTCTCCCTATCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008198:ENSBTAT00000010783:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.282 A=NA C2=0.256
Domain overlap (PFAM):
C1:
PF0078818=RA=FE(43.2=100)
A:
NA
C2:
PF0078818=RA=PD(31.8=71.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACTAGTCAGGACAAGGCCC
R:
GGATAGGGAGACTGAGGTTGT
Band lengths:
230-1752
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]