MmuINT0134187 @ mm9
Intron Retention
Gene
ENSMUSG00000040146 | Rgl3
Description
ral guanine nucleotide dissociation stimulator-like 3 [Source:MGI Symbol;Acc:MGI:1918996]
Coordinates
chr9:21775971-21778580:-
Coord C1 exon
chr9:21778466-21778580
Coord A exon
chr9:21776454-21778465
Coord C2 exon
chr9:21775971-21776453
Length
2012 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
TAGCCCCTGTTTCCATGCAGAGC
3' ss Score
7.39
Exon sequences
Seq C1 exon
CTTACTTGTCAGGACAAAGCCCCCAGCGTGGTGCAAAGAGCCCTGGAGAAGCACAATGTGCCCCAGCCCTGGGCCCGTGACTACCAGCTCTTCCAGGTCCTGCCTGGGGACAGAG
Seq A exon
GTAAGCAGAGAAAGCCTGCAGCCTGAGCTGGGCTTGGGGCCCATGGGTTCTGGCAAAAGCAGCTGAAGAGAAGGTTTATCTCGGCTCATGGTTCCGGAGCTACGGTCCATCGTGGCGGGGCAGGAAGGCAGAACTTTGAGGCCACTGTTCAATCAGCACCTGCAGCTGGGAAGCGAAGGGAGCCGGATGCTCCGTGCTTTCTCCTGCAAAAACCTTTTTTTTTCTTTTTCTTTTTGCATTACATATATTTCATTTTTGAGCGAGGCCAAGTGGTGGTAGCACACACCTATAATCCCAGCACTCGGGAGGCAGAGGCAGGCCAATTGCTGAGTTCGAGGCCAGCCTGGTCTATAGGGTGAGTTCCAGGACAGTCAGGGCTACACAGAGAAAAACTCTGTCTCAAAAAACAAACAACAAAAATCCCACAAGCAAACACCAAACACCCTCACCTTTGAGTGGGCGACATCCATGCCATGGTGTGCATGTCAGACAACTCAAGGGAGTTTATTCTCTCTTCATTTTTTCCTCCCATGTGGATCCCAGGGATGAAATGTCTTTTGTCAGGCAGGCGGCAGGCATCTTTACCTGCTCAGCCATCCCATGGGTCCAGACTGTGTTGGGGTTTTTTGTTGTTGTTTTTTTTTTTTTGTTTTGTTTTGGCTTGTTTATCTTTTTGGCTTTTCAAGACAAGGTTTCTCTGTGCAGCTCTTACTGTCCTGGAACTCACTGCAGACCAGGCTGGCCTGGAACTCAGAGATCTGCCTGCCTCTTCCTCCTGAGTGCTGGGATTAAAGGCTTGCGTACCACCAGCTGGCTTCTTACTGCGCTAAGCAGTGTGGAACCTTAGCCCATTGGATAACACCACCACATTCAGGCAGGTCCTCTGCCTCAGTTAGTCTAATCCAGGTAACAGGCCCAAACTTGTCTCTGAGATCATTCTAGTATTCGAGTTACAATCCTCACCAACCATCACTGCCCAGCTTGACCAGGTCTAGCAAGGCCACAGGTCAATCCAGGCAGAGTGCTAAAGCACCGTGAAGTCTGTAAAATGTCTGTCCCTTCACTCTGTGAGGTCAGGAGGTTCTGGCTCAGGATGGTCTTTCTGGGGTTGTGAGGCAGTGATACTGGCCAGGGTCTGATGGGAAAACCTGAACTTGGACTGGGACAGGGCCAAATGACCTTAGATTCAGGAGTACAGAGTTGTCCAGGATTGGTCAGAAATTGGCAAGACGTGGTGCTTTGAAGCATGGTGTGGAGCGAGCTGCACACCAGTGAAGCATGCATGAGCCTGGCAGGGTGGCAGGATGGCTCAGTGGTAAGAGCACACACTGTTGGAGCAGAGGACCCAGGTTTGGTTCCCAGCACCCATATCAGGCTCTTGACCACCTGTAACTCTAGCTCCAGAAGGCCTGACCCCTCTGACCTCTGTGGGCATCTGCAGTTATATACATACTCGTACACACACAACTGAAATAATAAAAATCTGAGCTGGAGAGATGGTTGAATTGATAAAAGCACTGGTTGTTCTTTCAGAGGACCCAGGTTTAATTCCCATTTATAGCTCCAGGGCTCATAGTTCCAGAGGGTGAGAAAAGCTCACAACACCGATGGCTCACATCCTGGATGGCAAGCAGAGTCCTTACATGAGATGGTGCATGGCTTTAAACTCTCCAAAGTCTGCCCCCAGTGATGTACTTCTTCCAACAGAGTCATACTTCTGTGCCTCCCCAAACAGTGTCCCCAATACTGGGACCAAGTATTCAATGCCCAAGACCGAGGGACTCAATTCAAACCCACACCCCACACATGTGCTCAGCGTCCTTCCGGATTGAGTGGGAAAGCCCTTAGCTTCTCAGGCGAGAAGTAGAAGGCTGGTGGAAGTCACCTGGAATAACTGTCACAGCCCGAGTTTGCCCGAGAAGCGGTTTCGGGGAGGTTAGGGTGTGGGAGAAAGTTGCTCAAGGAGCCCCCAGAGTTTGCAGGTCATCAATGTAGCCCCTGTTTCCATGCAG
Seq C2 exon
AGCTCCTGATTCCAGACGGTGCCAACGTCTTCTACGCTATGAGCCCAGCTGCCCCTGGTGACTTCTTGCTTCGTCGGAAAGAGGGGACAGGACATACACTGTCTGCCTCCCCAACCTGAGGTGGTGCTCTCCTTGTTCTGGGCCAGAGGCACAGCTGATAGCTTGGAACTTGGATTCTACTACTATCAAAGTAGGGGCCTATTTTCTGGAGAGCCTCCACCCCCACTCATGGAAGCTATTTTGCTCTGTACCCCGGGGATCCCCAGCATTAGGCCATTGGACCCCATCTCTCTGACTCCCTGAGCCCCTCCCTGCCCATTATTCTAAGACCATGGATGTGTGAGGAGAGTGTAAAACTAGGAAAAATTAAGAACCCATAGAGCTGGGAGCTTAGCTTAGGTGGGCGAGCACCTGCCTAGCAGGCCCCAGACCCTGGATGGTTTCTCAGCACTTCTAAAAATAAAAGTCTTCAGGGGTTTTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040146-Rgl3:NM_023622:18
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.359 A=NA C2=0.385
Domain overlap (PFAM):
C1:
PF0078818=RA=FE(43.2=100)
A:
NA
C2:
PF0078818=RA=PD(31.8=70.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: