HsaINT0139889 @ hg38
Intron Retention
Gene
ENSG00000205517 | RGL3
Description
ral guanine nucleotide dissociation stimulator like 3 [Source:HGNC Symbol;Acc:HGNC:30282]
Coordinates
chr19:11394057-11397358:-
Coord C1 exon
chr19:11397244-11397358
Coord A exon
chr19:11394521-11397243
Coord C2 exon
chr19:11394057-11394520
Length
2723 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGC
5' ss Score
5.97
3' ss Seq
CCATCTCCACTCCTGACCAGTGC
3' ss Score
4.58
Exon sequences
Seq C1 exon
CTGACCAGTCAGGACAAAGCCCCCAGCGTGGTCCGGCGAGCCTTGCAGAAGCACAATGTGCCCCAGCCCTGGGCCTGTGACTATCAGCTCTTTCAAGTCCTTCCTGGGGACCGGG
Seq A exon
GTGAGCAGGGATGGGTTGGAGCTCAGGATAGGGGGCAGCGGGGAGGCGAGCAGACTGACCACGCCCAAGGATGGAGCCCAAGGTTACCCGGGTTCACAGGGCTGTGAGGTGCTTCAGGCAGAGAGTAGGGGTAAGATAATCAGTGGAGGTAAGAGGACATAAAATACCTGTAACCCAACGATGTAGGGTCATGAGATTGTCTTGGCTCAGTGTGAGAGAGAGGTACCAAAGGTCATCTTCCTAAAATTTAAAAGACAATAAGATTGTCCAGGGTCCGGCCAGGCGCAGTGGCTCATGTCTGTAATCCCAGCACTTTGGGAGGTCAAGCTGGGCGGATCACTTGAGGTCAGGAGTTTGAGACCAGGCTGACCAACGTGGTGAAACCCCGTCTCTACGAAACATACAAAAATTAGTCGGGTGTGGTGGCACACTCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATAATTGCTTGAATCTGGGAGGCGGAGGTTGCAGTGAGCCGAGATCATACCACTGCACTTCAGCCTGGGCAGCAGAGCGAGACTCTGTTTAAAAAAAAAAAAAAAAAAAAAGACTGTCCACGGACAAGTGACAGAAGGGAGTGTTTCTGACCTTCAATTTGTAGGATGGGCTGGGCATGGTGGCTCACAACTGTAATCCCAGCACTTTGGGAGGTCAAGGTGGGTGGATTGTCTGAGCTCAGGAGTTTGAGACCAGCCTGGGCAACATGAGGAGACCCCATCTATACAAAAAATAGAGAAATTGGCTGGGTGCGGTGGCTCAACGCCTGTAATCCCGGCACTTTGGGAGGCCAAAGCGGGTGGATCACTTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAGCCCCGTCTCTACTAAAAATACAAAAAAATTAGCTGGGCATGGTGGCACATGCCTGTAGTCTCAGCTACTCGGGAGGCTGAGGCAGAAGAATCGCTTGAACCCAGGAGGCGGAGGTTGCAGTGAGCCGAGATCGCACCACTGCACTCCAGCCTGGCGACTGAGCAAGACTCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAATATATATATATATATATATATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTAGCTGAGCATGGTGGCATGTGCCTGTATTCCCAACTCCAACTACTGGGGAGGCTGAGGTGGGAGGATCACTTGAGCCTAGGAGGTGGAGGCTGCAGCGAGCTGAGATCACGCCACTGCACTCCAGCCTGGGTGACAGAGCAAGACCCTGTCTCAATTAAAAAAAAAAAAGGGGGCCGGGCATGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAAGTCAAGAGATCGAGACCATCCTGGCCAACATGGTGAAGCCTCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCATGGTGGCAGGCGCCTATAGTCCCAGCTACTCAGGAGGCTGAGGCAGAAGAATCACTTGAACCCAGGAGGTGAAGGTTGCAGTGAGCCAAGATTGCGCCACTGCACTCCAGCCTGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAGAAAAAATAGATTGTCTAGGGTCGAGTGAGAGAAGGGAGTGTAGAAGTTTGTCTGATCTTAAGTTTGTAGCATCATGAGATTGTTCAGGCTCAACCTGATGGGATGGGAGACTAAAGGGCATCTGGGCTTAGATTTGTGAGAACTAAGTTTGTTCACCACTGGGACCCTGAAGTTATCTGAACTTGGGACGGGAGAGAGGCAAATGGATAGCCGCGGAAGCATGAGATTGTCCTGTCTGACAGGGAGAAGCAAGGGATTGAGCGTATTCACGCTGAAGTACATGGCATGAGGTTGGCTGGATATTAGGAAAGGATGCTTGTGGTTGTTCAGGTGTTGAGTGTGAGGCCACAAGCTCGTGCAGGCTGGAAGTGGGAAGTTATTCAAGTTCATGGTGACAGCAGCATGGGATTGGCTGGGAGTGGTTGTGGGGGAGGGGTAGGGTGAGCAGGAAGTTGTTTGGCGGGGGGTGGTCTAGGGTGGTCTAAGTTTGCCCAAACTTTTACTGCAGGTTGTCGGTTTTGTTTGTTTTTGTTTTTTTTTTTTTGAGATGGAGTCTCGTGCTGTTGCCCAGGCTGGAGTGCAATGGCAGGATCTCGGCTCACCGCAACATCCACCTCCTGGGTTCAAGAGATTCTCCTGCCTCAGCCTTCCGAGTAGCTGGGATTACAGGCATGTGCCACCATGCCTAGCTCATTTTTTTGGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGACTGGTCTCGAATTCCTGACCTCAAGTGATCCACCCACTTCGGCCTCCCAAAGCGCTGGGATTACAGGCACGAGGCATCGCGCCCGGCCAGTTTGCTCAAACTTTTACTGCAGGTTGCCTTGTCTCTATGGTGAGGGGGAGAATATTAGGAGGTTGCCCAGGCTTATGATAAGGGAAGGCATGAGGTGGTGCAAGTTTTCAAGTGAGAAGTCGTCCAGGTTCCCAGTGACAGCAGAATGAGCTTGGCTTGGCAGTAGCTGCAGAGGGACCCATGGCTGTTCAGGTTCGCGGGTGAGTGGCAGGAGGCTCCCGGGTCCTCTGTGGGGGTGACACAAGGTTGTGAGGGCCTATTACCACCATCTCCACTCCTGACCAG
Seq C2 exon
TGCTCCTGATTCCTGACAATGCCAACGTCTTCTATGCCATGAGTCCAGTCGCCCCCAGAGACTTCATGCTGCGGCGGAAAGAGGGGACCCGGAACACTCTGTCTGTCTCCCCAAGCTGAGGCAGCCCTGTCCTCTCCACAAGACACAAGTCCCACAGGCAAGCTTGCGACTCTTCTCCTGGAAAGCTGCCATCCCCCAGTAGAGGCCACTGTGCTGTGTATCCCAGGACCACCACCCAACTGTAGCCCATTGGACCCCATCTCTTTTTCTGACTCTGTTGGTACTAGATCCATATTCCAAAGACATCAGCCCATGGGTGGCTGGTGGAGAGCTCAATCCCATAAATGTAGAAAGAGGTGGGGCATGGATACGTCAAATCCCTCCCCAGAGAAATCTTATAAATGTTAGAGACGCATCAGAAGTGACAGATGCGGATGAAAATAGTGACCAGAGTTATGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000205517:ENST00000380456:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.316 A=NA C2=0.359
Domain overlap (PFAM):
C1:
PF0078818=RA=FE(43.2=100)
A:
NA
C2:
PF0078818=RA=PD(31.8=70.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development