RnoINT0126481 @ rn6
Intron Retention
Gene
ENSRNOG00000013027 | Rgl3
Description
ral guanine nucleotide dissociation stimulator-like 3 [Source:RGD Symbol;Acc:1309756]
Coordinates
chr8:22980908-22985487:-
Coord C1 exon
chr8:22985373-22985487
Coord A exon
chr8:22981373-22985372
Coord C2 exon
chr8:22980908-22981372
Length
4000 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
TAGCCCCTGTTTCCATGCAGAGC
3' ss Score
7.39
Exon sequences
Seq C1 exon
CTTACTTGTCAGGATAAAGCCCCCAGCGTGGTGCAAAGAGCCCTGGAGAAGCACAATGTGCCCCAGCCCTGGGCCCGGGACTACCAGCTCCTCCAGGTCTTGCCTGGGGACAGAG
Seq A exon
GTAAGCAGAGACAGCTTGAGGGCTTAGGGGGTCTCGGCTCCATCCTGGCTGGAGCAGGGAGGCAGACTCTTGAGGCCACTGTTCAGTCCGCACCTGCAGTGGGGAAGCAGAGGGAGACAATGCTACGGCTCATCTTGCTTTCTCCTTCAAAAAAAACTTTCTTTCTTTTCTTTTTCTTCCTTTTCTTTTTCTTTTTTTTTCTTTTTCTTTTTCTTTTTTTTTTTTTTACATTTTATGTATTTCACTTTTGAGCAAGGCCAGGTGTTGGTGGCAAGCATCTTTAATCGTAGCACTCAGGAGGCAGGAGGCAGAGGCAGGCCAGTTGCCGAGTTCGAGGCCAGCCTGGACTATAGGGCAAGTTCCAGGACAGCCAGAGCTACACAGAAAAACTCTGTCTTGAAAAACAAACAAGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAAATTCCGGCAACCACAAGGTGGTTCACAATCATCTGTAATGAGATCCGATGCCCTCTTTCGGTGTGTCTGAAGACAGCTACAGTGTATTCATATCTAATAAATAAATCTTTAAAAATATTTAAAAAAGAAAAACAAACAAACAAAAACCATTCTTGAGTGGGGTATATTCATGACACTGCACACGTGGAGGTCCGACAACAACTTGAGGAGTTCACTCTCTCCTTCTACCCTGTGGGCCCCGGAGCTCAAACGTAGCTTGTCAGGCTTGCAATGAGCACTTTTACCCACTTAGCCATCCCACGGGTCTGTACCGTGTTTGCTTTTTGCTTTTTTTTTCTTTCTTTCTTTCTGGTTTTTCCAAGACAGGGTTTCTCTGTGCAGCTTTTGCTGTCCTGGAATTCTCTGTACTTTTGCTGTGTACTTTTGCTGGCCTAGAACTCAGAGATCCACCTGCCTCTGTCTCCTGAGTGCTGGGATTAAAGGCTTGCACCACCACCACCTGGCTTCTTACTGTGTTAAGCCGTGTAGAACCTCAGCCCATTTGGTAACGCCACCACATTCAGGCAGGTCCTCTGCCTCAGTTAGCCTAACCCAGGTAATGGGCCCAACCAAGTTTGTCTCTGAAGTCATTCTAGTATTGAGTTACAACCTGCACCAACCATCACTGCCCAGCTTGACTAGGGCTAGCAAAGCCACAAGTCAATTCAGGCAGAATGTTGATGTACCATGAAGTGTGTAAAATGTCTGTGACTGGATGGTCTTTCTGGGGTTGTGAGGCAGTGATATTATCCAGGGTCAGATAGGAAAAGATGTAGAAAGCTTGTAGGTTTTGCTGTTCAGCCTCAGGCTGACCCAGCAGGCAACTGAAGGGGTTGGAAGAGAGAATGAATCTGTTTGGCTCATCATGAGGGCCCTGGGGTCACTTGAACTTGCACTGGGACAGGGCCAAATGATCTTGGATTCAGAAGTGCAGGGTAGTCCAGGCTTGGTCAGAAATTGGCAAGAGGTGGTGCTATAAAGCGTGGTATAAAGTAAGCAAGACACCAGCAAAGAATTTATGAGCCTGGTGGGATGGCTCAATGGTAAGAGCACACACTGTTCTAGCAGAGGACCCAGGTTTGGTTCCAGCACCCATTTCAGGTAACTCATGACCTGTAACTCTAGCTCCAGGGGCCTGACCCCCCTGACCTCTGTGGGCATCTGCAGCCATATGCATACACATATATGCACAATTAAAACAATCAAAATCAGAGCTGGAGCTATGATTCAGTTGTTAAAAGCACTGGCTGTTCTTTCAGAGGACTCAGGTTTGGTTTCCAGCCCCCACATGGCAGCTCACAACCATTTATAACACCAGTTTCTGGGGATTCAACACCCTCTTCTGGCCTCTGTGAGCACCAGGCATGCACATAGTACACATACTTACATACATACATAATACATACATACATACTTCCATGCATACATATACACAGGCAAAACACACATTCACACTGTAGCTGTCTTCAGATACACCAGAAGAGGGCACCAGATCTCTTTACAGATGGTTGTGAGCCACCATGTGGTTGCCGGGAATTGAACTCATGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCCACACATTCACATAAAATAAAAATGGATAACAATAATAACTTAGAGAATGTATGAAGGCTGGGTGACGGCTCACTTGGTAGAGCATTTGCTGTGCAAGCATGGGAACCTGAGCTGGAGTTCCCAGAACCTATGCAATAAAGCTGGGTGTGGTGTTGTGGATCCATAATCCCAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGAGTCAGGCGAATCCCTGAGCCTCACTGGCCAGCCCTACTTAATGAGTTCCAGGCCAGTAAGGGGGCCCTGTCTTAAAAAAAAAAAACAAAAAAACAACCGGGCTGGAGAGAAGGCTCATTGCTTGAGAGCACTCACCGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGTCTCACAACCATCTGTAATGGATCTGGTGCCCTCTTCTGGTGTGTCTGAAGATAATGAACGTGTACTCATATACATAAAAGTAAATTTTTCTTAAAAAATAAAACAAACAAAAAACCTAAAAAGTCACAGGATCCTGAGGAACAACATTTAAGACTTACATGCACACACGGAGCATGGGGGCACAGGCCTGTAATCCCAGCATTTAGGAGGCCAGGGCCAGCCTGGGCTACAGAGTGAATTTAAGGCTAGTCTGAACAGTTTAGTATGACCTGGTCTTAAAGAGAAAAAAAGAGCCAGGGGCAGTTGGGAGTGGTGACAGGGTCTGTAATTCTAACCACCCAAGAGGCTGAGCAAGAAATTCCAAGTTCAAAGCCTAGAGCAGGCATGGTGACTCAAACCTGCAATCCCAGCATTTGGGAGAGTGAGGCAGGAGAATTGTAATGAGTCACAGGTTGGCCAGGACAACTTAGTGAGACCCTGTTTTAAAAGAATACAAATAGGTCCAGAGTGTAGTGCAGTTGCTCGAGAGCTCGGTTAACACCTGTGGAAACCTAACTCTGTCCCAGCATACAAACCAGGTCTGGTGGTGACACCTTGTAATCCCAACACTCAAGAGATGAAGGCAGGAGAATCAGGAGTTCAAGGTCACCTACATAGAGAGGAGGAAGCCAGCCTAAGCTACATAAGACCCTGTCACAAAAACTGTAACAAAAGTCACAAGAAAAAAAAGGGGGCTCCGGATATAGCTCAGTAATAGGCTGCTCACCTTACATATCCAAGGCTAGCCCTTAGTGAGAGAGAGCTGTGAATATAGCTCAGTGGCAGTATGTGCCTACCATGTGTAAAGCTGGGTTCAGTGTCCAGTGCCAACTGTGCCTGTGTGTGTGCATGTGTGTGTGTGTGTGTGTGTTATTATGCATATAAATATTCATACATACAAACACACACACTATATGGGTTACTTTTCTGTTGCTGTGATAAACACCATGAGTAAGGTAGCCTGTAGAAGGAAGTTTATTTGGGCTCATGGTTCCAAAGAGAAAAGCCCATGACACTGATGGCTCACATCTTGAATGGCAAGCACAAAGCAGTCCTTACTTGAGATGGCACATGGCTTTAAACTCTCCAAAGTCTGTCCCCAATGATGTACTTCTTTCAACAAAGCCATACTTCCTAAGCCTCCCCAGGCAATGCCACCAACTAGAGACCATGTATTCAAGAGCCCAAGACTGTGTGGAACATCTCAATTCAAACCCACAGCCCTACTCACTTGCACAAAGAACCCTTCGAGGTCGAGTGTGGAAGCCCTTAGCTTCCACAAGTGGAAGGCCTGTGGAAGTGATCTGGAATAATTGTCCCAGCAGCCTGAGCTTGCCTGGGAAGTAGTTTGGGAGAGGTTGGGGTGTGGGGGAAGCCATTTGAATGGTAGAAGTTTGCCCAAGGAGCCCCCAGAATTTGCAGGTCTTCCACTGTAGCCCCTGTTTCCATGCAG
Seq C2 exon
AGCTCCTGATTCCTGACAGTGCCAATGTCTTCTATGCTATGAACCCAGCTGCCCCTGGTGACTTCTTACTTCGTCGGAAGGAGGGGACAGGACATACACCCTCTGCCTCCCCAAGCTGAGGCGGTGCTCTCCCTGTCCTGAGCCAGAGGCACAGCTGACAGCTTGGAACCTGGATTTTACTACCATCAAAGTAGGGGCCCTGGAGAGCCTCTGTCCCCAGTGGAAACCATTTTGCTCTGTACCCTGGGGTCCCCCAACTTTGGGCCATTGGAGCCCCATCTCTTTGACTCCCTTGGCCCTTGACCATTATTCTAAAAGCATGGATGTGTGGGAAGAGTGTAAAACTAGGAAGAATCAAGGGCGCTCAGCTTAGGTGGGAGAGCCTTTGCCCAGCAGCCCCAGACCCTGGATGGTTTCCCAGCACTTCCAAAATAAAAGTCCTAAGGGACTTGGACTATGAGATGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013027:ENSRNOT00000017493:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.538 A=NA C2=0.462
Domain overlap (PFAM):
C1:
PF0078818=RA=FE(43.2=100)
A:
NA
C2:
PF0078818=RA=PD(31.8=70.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]