BtaINT0124466 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008198 | RGL3
Description
ral guanine nucleotide dissociation stimulator-like 3 [Source:HGNC Symbol;Acc:HGNC:30282]
Coordinates
chr7:17021031-17021420:-
Coord C1 exon
chr7:17021367-17021420
Coord A exon
chr7:17021246-17021366
Coord C2 exon
chr7:17021031-17021245
Length
121 bp
Sequences
Splice sites
5' ss Seq
GAGGTTTGC
5' ss Score
3.52
3' ss Seq
GTCCCACCCCTCTTGGCCAGGGC
3' ss Score
5.65
Exon sequences
Seq C1 exon
GGTGGAAATCAAGAAAACAGAAGGAAGAGATCTGACTTTCAACAAGAACTTGAG
Seq A exon
GTTTGCCTCCAATAGGGTGGGGGAGGGGGAGGGCAGAGGTCAAAGATCGGATCTGAAATGAAGGAGATCCGGGAGTCTGCAACTGTGGGATGGGCTCTGAGGTCCCACCCCTCTTGGCCAG
Seq C2 exon
GGCTGTGGTGTCAGTGCTGGGCTTATGGCTGCGGGACCACCCTCAGGATTTCTGGGACCCCCCTGCCCACTCGGACCTAGGCAGTGTTTGCAACTTTCTGGGCTGGGCAGCTCCATCAGGGGCTGAGGCCCAGGAGGCTGAAAAGCTGCTGGGAGATTTCCTGAAGGAGGCGAAGACAGAGCAGGAGGAAGAGGAGCAGTGCCAGACACGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008198:ENSBTAT00000010783:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.474 A=NA C2=0.274
Domain overlap (PFAM):
C1:
PF0061815=RasGEF_N=FE(16.8=100)
A:
NA
C2:
PF0061815=RasGEF_N=PD(29.9=43.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGAAATCAAGAAAACAGAAGGA
R:
CCTCTTCCTCCTGCTCTGTCT
Band lengths:
248-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]