MmuINT0134190 @ mm9
Intron Retention
Gene
ENSMUSG00000040146 | Rgl3
Description
ral guanine nucleotide dissociation stimulator-like 3 [Source:MGI Symbol;Acc:MGI:1918996]
Coordinates
chr9:21791943-21792348:-
Coord C1 exon
chr9:21792295-21792348
Coord A exon
chr9:21792158-21792294
Coord C2 exon
chr9:21791943-21792157
Length
137 bp
Sequences
Splice sites
5' ss Seq
GAGGTCGGT
5' ss Score
5.44
3' ss Seq
CCACACACCCCTCTGTTCAGGGC
3' ss Score
5.75
Exon sequences
Seq C1 exon
GGTAGACAGCAAGAGGACAGAGGGACAAGATCTGAACTTCAGCAAGAACCTGAG
Seq A exon
GTCGGTTTCCATTCCCGTCCACACCCTCGACCCAAGGGAGCGTGGGGGAGGGATCTCAAGGTCGGGTCTGACGACTGCAAGGTTGGGAACGTTTAGATCCTTGGACTCAATTTTGAGCCACACACCCCTCTGTTCAG
Seq C2 exon
GGCTGTAGTTTCGGTGCTGGGTTCTTGGCTGCGAAATCATCCTCAGGACTTCCGGGATCCCCCTGATCATCAGAACCTAGGCAATGTCCGAATCTTTTTGGGCTGGGCAGCCCCAGGAGGGGCAGAAGCCAGGGAAGCAGAGAAACTTCTAGAAGATTTCTTGAAGGAGGCTAAGGGAGAGCAGACAGAGGAGGAAAAGCGACTGGCTTGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040146-Rgl3:NM_023622:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.632 A=NA C2=0.500
Domain overlap (PFAM):
C1:
PF0061815=RasGEF_N=FE(16.5=100)
A:
NA
C2:
PF0061815=RasGEF_N=PD(29.4=43.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGCAAGAGGACAGAGGGA
R:
CGCTTTTCCTCCTCTGTCTGC
Band lengths:
251-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: