GgaINT0125396 @ galGal3
Intron Retention
Description
NA
Coordinates
chr17:7454428-7454836:-
Coord C1 exon
chr17:7454823-7454836
Coord A exon
chr17:7454708-7454822
Coord C2 exon
chr17:7454428-7454707
Length
115 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
CTCTGTTCCCTTCCCCACAGCAC
3' ss Score
11.2
Exon sequences
Seq C1 exon
ATGGAGCTGAAGAA
Seq A exon
GTAAGTCTGACCATGCTGGGGATGATCGCTGTTCGGTTCTCGCATGGGGGCGTGTGCTGTCCCATGTGTGTCTCATGACACCACCCAGTTCTCCCCTCTGTTCCCTTCCCCACAG
Seq C2 exon
CACCATCTCCTCCATCCTGGGCGCCTGGCTGGACCAGTACTCAGAGGACTTCCGCAAGCCCCCAGACTTCGCCTGCCTCAAGCAGCTCATCTCCTACGTGCGCCACAACATCCCCGGTTCGGACCTGGAGCGCCGAGCCCGCATCCTGCTGGCCCAGTTCCAGCAGCAGGAGCAGAGCGAGACCGAAGCAGAAGGTAGGGGTGGTTCCCTGCTCATGGGGCTGCTGGGGGCTGTAGGGAGCTTCAGGTGTCACCACGTGGCTGGACGTGGAGGGACGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003412:ENSGALT00000005397:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.064
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]