MmuINT1029495 @ mm10
Intron Retention
Gene
ENSMUSG00000026821 | Ralgds
Description
ral guanine nucleotide dissociation stimulator [Source:MGI Symbol;Acc:MGI:107485]
Coordinates
chr2:28542855-28543747:+
Coord C1 exon
chr2:28542855-28542950
Coord A exon
chr2:28542951-28543553
Coord C2 exon
chr2:28543554-28543747
Length
603 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
ACTCTGTTGCGTGTCCCCAGTGC
3' ss Score
9.73
Exon sequences
Seq C1 exon
GTACGGTAGATGTGACGCCCTCACGGCCTCCTCTAGATATGGCTGCATCCTCCCCTACTCCAGTGAGGACGGCGGACCGCAGGACCAACTCAAAAA
Seq A exon
GTAAGTAGGCTTTACGTCCAGAGGGGAGGTTTAGGGAACAAGGGTCGAGCAAACTATAGGCCCACACATGTGGTTCCTGATGCTGGGCTAAGGTCTAAGGCTACCCCTGTGTCAGATGGAAGAGGAGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAAAGAGAGAGAGAGATTGATTGATTGATTCAGAACCAGTCACTGTGAAAATCCTTCCCTAGCATAGCCTGTCTCAATAGACGTGCAGCCTCACTCCTTAAGAATGGGCATTTAGCTGGTCCCTGAGTCCCTCAGGAAAATGCAACCCATACCTGGCTTACAAAGAATAGGTACTGAGGTAACCCTTGCCACTGGTTGAATGGCAGGCCCTTTGGGCATCTCCATTCCAGTAGAGTTGGGCAGGAGTGGGAACCGGGTGAGCCACCATCCCATTGATGAGCCTTTGCTGCCTCCTGTAGGACCCTCTGTAGCCTCTGTCTAGTTACTTGGACAGCCAAAGGGGACTTGTGGGTGGAGGCACACCAGGATGCTGTGGGAGGGTACGAGGAGAGACCATGCCTCTGACTCTGTTGCGTGTCCCCAG
Seq C2 exon
TGCCATCTCCTCCATCCTGGGCACCTGGCTGGACCAATACTCAGAGGATTTCTGTCAACCTCCGGACTTTCCCTGCCTCAAGCAGCTGGTGGCTTATGTACAGCTCAACATGCCTGGCTCAGATCTGGAGCGCCGCGCTCACCTTCTCCTGGCCCAGCTGGAGGACCTGGAGCCCAGTGAGGCTGAGTCTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026821:ENSMUST00000028170:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=NA C2=0.147
Domain overlap (PFAM):
C1:
PF0061815=RasGEF_N=FE(28.3=100)
A:
NA
C2:
PF0061815=RasGEF_N=PD(28.3=48.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACGGTAGATGTGACGCCCTC
R:
CCTCAGACTCAGCCTCACT
Band lengths:
289-892
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types