GgaINT0125396 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C4E7]
Coordinates
chr17:6794499-6794968:-
Coord C1 exon
chr17:6794894-6794968
Coord A exon
chr17:6794779-6794893
Coord C2 exon
chr17:6794499-6794778
Length
115 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
CTCTGTTCCCTTCCCCACAGCAC
3' ss Score
11.2
Exon sequences
Seq C1 exon
GTATGGCAAACTGCACGTGCAGACGAACGGGGACCATGCCAGGCATGTTGTGGACGAGAGGATGGAGCTGAAGAA
Seq A exon
GTAAGTCTGACCATGCTGGGGATGATCGCTGTTCGGTTCTCGCATGGGGGCGTGTGCTGTCCCATGTGTGTCTCATGACACCACCCAGTTCTCCCCTCTGTTCCCTTCCCCACAG
Seq C2 exon
CACCATCTCCTCCATCCTGGGCGCCTGGCTGGACCAGTACTCAGAGGACTTCCGCAAGCCCCCAGACTTCGCCTGCCTCAAGCAGCTCATCTCCTACGTGCGCCACAACATCCCCGGTTCGGACCTGGAGCGCCGAGCCCGCATCCTGCTGGCCCAGTTCCAGCAGCAGGAGCAGAGCGAGACCGAAGCAGAAGGTAGGGGTGGTTCCCTGCTCATGGGGCTGCTGGGGGCTGTAGGGAGCTTCAGGTGTCACCACGTGGCTGGACGTGGAGGGACGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003412:ENSGALT00000005397:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.064
Domain overlap (PFAM):
C1:
PF0061815=RasGEF_N=FE(23.6=100)
A:
NA
C2:
PF0061815=RasGEF_N=PD(30.2=34.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCATGTTGTGGACGAGAG
R:
AACCACCCCTACCTTCTGCTT
Band lengths:
242-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]