HsaINT0137009 @ hg19
Intron Retention
Gene
ENSG00000160271 | RALGDS
Description
ral guanine nucleotide dissociation stimulator [Source:HGNC Symbol;Acc:9842]
Coordinates
chr9:135984060-135985108:-
Coord C1 exon
chr9:135985013-135985108
Coord A exon
chr9:135984254-135985012
Coord C2 exon
chr9:135984060-135984253
Length
759 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
TGCCACCCACCTGTCCCCAGTGC
3' ss Score
8.27
Exon sequences
Seq C1 exon
GTACGGTAGATGTGACGCCCTCACGGCCTCCTCTAGATACGGCTGCATCCTCCCCTATTCCGACGAGGATGGTGGACCCCAGGACCAACTTAAAAA
Seq A exon
GTGAGTGAGCTTTGAGCCAAGAGGAAGGGACCCTGTCCCCACCGAACAGTGGGAGAGTACATGGGGCTGGGGCCGGAGCCGGGGCTGGCTGGGCAGAACCCTGGCTCCCACACCTCTTGTGGTTCCTGCTAGAGGGCTGGGGTCTGGGGGCTTCGCCTGCAGGAAGAAAGACGACCGAGAGCTGTGGAGGGGTCCTGGGGTGGCTGGGGCTCGGGGCAGCCCCCGGCGGGAACTCATCCCACCATAGCCTCATCCCAGCTGGCCTTGGCTCAGTGGGCCCTGATCTAGGGGCCCCTGGCAAGAGGTGGGGTGAGCCTCTGCTCTCACATTGCCTCACCCCTCAATAGTGAGTGCTCAGTGGGCAGGCTGCACCCCACCCTCTGGGAGAACAGGATTAGTGGGAAGATGAGACCCACACACAGCTCTGAGAGAGTAAGGCAGCTCACCAGCACTGAGCTACAAGTTGAGGAGCCGCCAGGGACCTGCAGATGCCCGGCAGGAGGACCGATCCCTCATGGAGTTTACATTCCAGCGAGGAGGGGGTGCTGGGAGACATGCAGAGCTGTGGGCGGGGCTTCCTTGGAGGAGGGGAGAGGTGTTCGCCACTGACCAGGGGCCTCCTTGGTTCTTTTAGCTGGACAGCCAAGGGGGCTTGGGCCGGGGCAGGTGGCCTTCAGATGGACAGGGGCCGGCTCAGGAGCCCAGCCTGGCTCAGGGGAGCCCAGGCCTCTGACTCTGCTGCCACCCACCTGTCCCCAG
Seq C2 exon
TGCCATCTCCTCCATCCTGGGCACCTGGCTGGACCAGTACTCGGAGGATTTCTGTCAACCTCCGGACTTTCCCTGCCTCAAGCAGCTGGTGGCCTACGTGCAGCTCAACATGCCAGGCTCAGACCTGGAGCGCCGTGCCCACCTTCTCCTGGCCCAGCTGGAGCACTCGGAACCCATTGAGGCAGAGCCTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160271-RALGDS:NM_006266:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=NA C2=0.296
Domain overlap (PFAM):
C1:
PF0061815=RasGEF_N=FE(19.8=100)
A:
NA
C2:
PF0061815=RasGEF_N=PD(31.7=48.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACGGTAGATGTGACGCCCTC
R:
GCCTCAATGGGTTCCGAGTG
Band lengths:
278-1037
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)