RnoINT0123939 @ rn6
Intron Retention
Gene
ENSRNOG00000010219 | Ralgds
Description
ral guanine nucleotide dissociation stimulator [Source:RGD Symbol;Acc:3533]
Coordinates
chr3:7119953-7120890:+
Coord C1 exon
chr3:7119953-7120012
Coord A exon
chr3:7120013-7120696
Coord C2 exon
chr3:7120697-7120890
Length
684 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
ACTCTGTTGCCTGTCCCCAGTGC
3' ss Score
9.85
Exon sequences
Seq C1 exon
ATATGGCTGCATCCTTCCCTACTCCAGTGAGGACGGCGGACCACAGGACCAACTCAAAAA
Seq A exon
GTAAGTAGGCTTTTAGTCCAGAGGGGAGGTTTGGGGAACAAGGGCTGAGCAAACTATAGGCCCCACACATCTGGTTCCTGCTGCTGGGCTGAGGTCTAAGGCTCTTCCTGTATCCGAAGGAAGATAGAATTCAGGGTGATACTGCACTTTCAAGGAGCTGAGTAGAGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGAGAGAGAGAGACAGACAGGCAGGCAGACAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGCAGTCACTGTGAAAATCCTTCCCTTGTATAGCCTATCTCAATAGACATGCAGCCTCACTCCTTAGGAATGGGCGCTTAGCTGGTCCCCGTGTCCCTCAGAAAAATGCAACCCACACCCAGCTCAAAAAGAATAGGTGCTGAGGTAACCCTCGCCGCTGGGTGAATGGCAGACTAGAGGACAGACCCTTGAGGCATCTGTGTTCCATCAGGAGTGGGGACGGTTCCCTAAAGAACCAGGAGAGCCCCCCATTCCATTGATGAGCCTTCGCTCTCTCCTGTAGGATCCTCTGTAGCCTCTGTCTAGTTACGTGGGTGGGGGCACATCAGGGTGCTGTGGGAGGATGGGAGGAGAAACCATGCCTCTGACTCTGTTGCCTGTCCCCAG
Seq C2 exon
TGCCATCTCTTCCATCCTGGGCACCTGGCTGGACCAATACTCCGAGGACTTCTGTCAACCCCCGGACTTTCCCTGCCTCAAGCAGCTGGTGGCTTATGTGCAGCTCAACATGCCTGGCTCAGACCTGGAGCGCCGTGCTCACCTTCTCCTGGCCCAGCTGGAGGACCTGGAGCCCAGTGAGGTTGAGCCTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010219:ENSRNOT00000013809:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.136
Domain overlap (PFAM):
C1:
PF0061815=RasGEF_N=FE(19.8=100)
A:
NA
C2:
PF0061815=RasGEF_N=PD(31.7=48.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCTGCATCCTTCCCTACT
R:
GCTCAACCTCACTGGGCTC
Band lengths:
246-930
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]