HsaINT0139892 @ hg19
Intron Retention
Gene
ENSG00000205517 | RGL3
Description
ral guanine nucleotide dissociation stimulator-like 3 [Source:HGNC Symbol;Acc:30282]
Coordinates
chr19:11526613-11527341:-
Coord C1 exon
chr19:11527288-11527341
Coord A exon
chr19:11526825-11527287
Coord C2 exon
chr19:11526613-11526824
Length
463 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
GACCCTGCCTCTCTGGCCAGGGC
3' ss Score
8.87
Exon sequences
Seq C1 exon
GGTAGAGATCAAGAAGACAGCGGTACAAGATCTGAGCTTCAACAAGAACCTGAG
Seq A exon
GTGGGTCCTTCATCCAGATAGGGGAGTGCGGGGAGGGAAATCCAAGAGGTCAAAGGTTAGCAGTCGGACTGGGGTTTTGAAAATTGCAGGTTGGGTAATAAGAGACTGGGAGTCAGGTGGGGCGTGGTGGCTCATGCCTGTAATCCCAACACTTTGGGAGGCCGAGGCAGGTGGATCACTGGAGGTCAGGAGTTAGAGACCATCCTGGCCAATATGGCGAAACCCTGTCTCTACTAAAAATACAACAACAACAAAAAAAGGTAGCTGGGTGTGGTGGCGCATGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTTGCAGTGAGTCAAGATCAGGCCATTGCACTGCAGCCTTGGTGACACAGTAAGACTCTATCTCAAAAAAAAAAAAAAAAAAGGTACCAGGAGTCATATTCTATGTCCCCCACTCTGGACCCAGCTCTGAGACCCTGCCTCTCTGGCCAG
Seq C2 exon
GGCTGTGGTGTCAGTGCTGGGCTCCTGGCTGCAGGACCACCCTCAGGATTTCCGAGACCCCCCTGCCCATTCGGACCTGGGCAGTGTCCGAACCTTTCTGGGCTGGGCGGCCCCAGGGAGTGCTGAGGCTCAAAAAGCAGAGAAGCTTCTGGAAGATTTTTTGGAGGAGGCTGAGCGAGAGCAGGAAGAGGAGCCGCCTCAGGTGTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000205517-RGL3:NM_001161616:4
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.466 A=NA C2=0.576
Domain overlap (PFAM):
C1:
PF0061815=RasGEF_N=FE(16.8=100)
A:
NA
C2:
PF0061815=RasGEF_N=PD(29.9=44.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGATCAAGAAGACAGCGGT
R:
CTGTCCACACCTGAGGCGG
Band lengths:
263-726
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)