RnoINT0126483 @ rn6
Intron Retention
Gene
ENSRNOG00000013027 | Rgl3
Description
ral guanine nucleotide dissociation stimulator-like 3 [Source:RGD Symbol;Acc:1309756]
Coordinates
chr8:22998528-22998942:-
Coord C1 exon
chr8:22998889-22998942
Coord A exon
chr8:22998743-22998888
Coord C2 exon
chr8:22998528-22998742
Length
146 bp
Sequences
Splice sites
5' ss Seq
GAGGTTGGT
5' ss Score
6.36
3' ss Seq
ACATACCCCTCTCTGTCCAGGGC
3' ss Score
8.76
Exon sequences
Seq C1 exon
GGTAGACAGCAAGAGGACAGAAGGACAGGATCTGAACTTCAGCAAGAACCTGAG
Seq A exon
GTTGGTTTCCATTCCCCCCACCCCACCCCCCACTCAAGGGAGCCTGGGGGAGAGAGAGGATCTCAAGGTCAGGTCTGACAGCTGCAAGGTTGGGAAGGTCTAGATCCTTGGGCTTAGTTTTGAGTCACATACCCCTCTCTGTCCAG
Seq C2 exon
GGCTGTAGTTTCGGTACTGGGATCTTGGCTGCGAGATCATCCTCAGGACTTCCGGGATCCCCCTGATCATCAGAACCTGGGTGATGTCCGAATCTTTCTGGGCTGGGCAGCCCCAGGAGGGGCAGAAGTCAGGGAAGCAGAGAAACTTCTAGAAGATTTCTTGAAGGAGGCTAAGGAAGAGCAGACAGAGGGGGAGCAGCGACTGGCTTGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013027:ENSRNOT00000017493:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.632 A=NA C2=0.438
Domain overlap (PFAM):
C1:
PF0061815=RasGEF_N=FE(16.5=100)
A:
NA
C2:
PF0061815=RasGEF_N=PD(29.4=43.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGAGGACAGAAGGACAGG
R:
CTCCCCCTCTGTCTGCTCTTC
Band lengths:
242-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]