BtaINT0125030 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021020 | RIF1
Description
replication timing regulatory factor 1 [Source:HGNC Symbol;Acc:HGNC:23207]
Coordinates
chr2:44798175-44799005:-
Coord C1 exon
chr2:44798895-44799005
Coord A exon
chr2:44798238-44798894
Coord C2 exon
chr2:44798175-44798237
Length
657 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAAT
5' ss Score
3.53
3' ss Seq
CCTTTTATTTTGTTTGGCAGATG
3' ss Score
10.46
Exon sequences
Seq C1 exon
AACCACTTGAACATCCATTAATCAGCAGCTCTTCTTTTTTCTCCAAACACTCAAATACACTTATCACTGCTGTTCATGATAGCTTTGTTGCAGTTGGAAAAGATGCTTCTG
Seq A exon
GTGAATATTTAAGAGAAGATTTTTATTGCTTAAACTTGTGTTTAAAAATAAAATAAATATTTATATGGTGCCACTTGCTTCTAGATTGTTCTGCAAGAGCTTTATATGTAATTCATTTAATCCTAATAGTAACCTTATTGTGTATTAGCCCATTTTGCAGATAAGGGATTGTGTTGTACAGAGAAGTAACTAACTTATGCCTGGTTATGAAGTGATAGAGCTATGATTCAAACCTGGGCTTTGTGATTTTAGTATCTATACCTAAACCTCCTGTGTTCTAAAGCCTATCAAATAATGACACATTTCAAAAATAAGATAGTTTGCTATTTAACTTGCTGGAAGATTTTTTTCTAGTGGCTTTCAGATATCCTTCTGAATCTTGGTTTTTCCTTGTATCAAAAATAAAAAGTGTTCAATAACAGAAAATATGATTGATAGAAAAAATTATCCAGAGTGTGTTAGTCCATTTGAAAACATATTTCTCTAAACAGAAATGAGGTGATAGTATATTATAAACTGAGTTAAAAGGTTGACTATTACAAGGAGAATTGTATTTCAAAGTATTGCTCAGTTTATTTCGGTAGTATAAGCATAAAAGGGGGAGCCTTTGTAGTTATATATACTTCACTCTAAAATACCTTTTATTTTGTTTGGCAG
Seq C2 exon
ATGTAGTTATTAATGCTATTTGGAAGGAGTTAATTAGCTTGGTGAAGTCAGTTATTGAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021020:ENSBTAT00000027997:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]