BtaINT0125517 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011588 | RNF123
Description
ring finger protein 123 [Source:HGNC Symbol;Acc:HGNC:21148]
Coordinates
chr22:51072649-51072952:-
Coord C1 exon
chr22:51072838-51072952
Coord A exon
chr22:51072754-51072837
Coord C2 exon
chr22:51072649-51072753
Length
84 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGC
5' ss Score
6.64
3' ss Seq
CTCCTCCCCCGCATCCCCAGGAA
3' ss Score
8.97
Exon sequences
Seq C1 exon
CTACCCAGTGGCGGGCTACCGGCCCCTGCAGGACCCGCCGAGCACCAGCCTGGTGCGGGCACAGAGGTTGCTGGGCTGCTTCCGGGCAGTGCTCAGCATGGAGCTGGACCCCGTG
Seq A exon
GTGAGCCGGCATCCGGGCTGGGTGGGCTGGGGGCTTTCTGCAGCCCTCCGCCCCTCACCGTCCTCTCCTCCCCCGCATCCCCAG
Seq C2 exon
GAAGGGCGGCTGGTGGAGAAGGAGAGCTCTGAGTGGCAGTTGCAGGGACAGCCCACCGTCCTCCTCACCCTGGCCCACATCTTCCATCACTTTGCACCGCTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011588:ENSBTAT00000045376:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCGGGCACAGAGGTTG
R:
AGGAGCGGTGCAAAGTGATG
Band lengths:
167-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]