GgaINT0022701 @ galGal3
Intron Retention
Gene
ENSGALG00000002486 | RNF123
Description
NA
Coordinates
chr12:2186833-2187838:+
Coord C1 exon
chr12:2186833-2186939
Coord A exon
chr12:2186940-2187733
Coord C2 exon
chr12:2187734-2187838
Length
794 bp
Sequences
Splice sites
5' ss Seq
ACGGTAGGC
5' ss Score
8.81
3' ss Seq
GTCTGGGTTTGTCATTGCAGGAG
3' ss Score
7.12
Exon sequences
Seq C1 exon
TGGAAGGCTACCGCCCCTTGCAAGATCCTCCTGTTGCAGACCTCGTGAAGGCTCGCAAGCTGCTGGGCTTCCTGAAGAATGTGATCCATATCGGGATCGATGTGACG
Seq A exon
GTAGGCTGATGTTACTGGACAGGTCTGGGGGACATCATGCCAGGAAATGTGGTTCTCCACTCTGTACATGCTCACATTTTTCCTACATGCTTTTACATGGGGCGTACGCATCTCTGCTCTTTGATTTGCAAAATGGGATTCTTAATAGTTCCACCCTAAGGCTTCAGCTACATCATACTGGGCCTTGTTGTTCTCAGTCTCACAAAGTTTCCTTCCAAGAGATGATGATTGTTGGGTTCAGAATTACTGCATTTAATTTTGCAGCCTTGAAAGAAATTTGTTTGCAGCCCATCCATTCTCCTGATGTCCCGGTGCAATGAGGGGGTCACTCTCTGGCAGGCCTGCCATGAGAACTGTTTTGGTTGTACCACTGTTCAGCAGAAAACAGGTTTTTTTTCCTCTAGGGTGAGAGATGTTCTGTTACTGCCCTAAGCACAGGGAATGCTCTCTGCTATAGTCTCAATGTACTTGGAAGCCCAGTTCACTTGTTGACCTCCTCTGCAGAGATTCCCATTTACAAGTAATGACATGCACTCAGAAAATGAGTTTTCATTTGGAAAAGCAGATTGTCAGGGTGCATGCATGTGACTGATACTGACACCTGGGCAGAAATACAGCTCTCTGGAGGCATGGTCGTGGCTGCTGCTCTGCCATCCTAAATTGACACATTCAAGCTCAGTTCTAGCATGTGATAGCAAGCAGTGGCTGCTCCAGGCCCCTGGTACATTCAGTTATAGGTGCAGGGGTGGACTGGGCGGGCACCAAGCTGTGTTTGTCTGGGTTTGTCATTGCAG
Seq C2 exon
GAGGGGAAGCTGGTGGAGAAGGATGCGTCCATGTGGCAGCTGCAGGGAGAACCCACAGTGCTGATTACATTAGCCCACATCTTCAATTATTTCTCCCCTCTTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002486:ENSGALT00000003917:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACCGCCCCTTGCAAGATC
R:
AGGGGAGAAATAATTGAAGATGTGGG
Band lengths:
199-993
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]