RnoINT0127619 @ rn6
Intron Retention
Gene
ENSRNOG00000033378 | Rnf123
Description
ring finger protein 123 [Source:RGD Symbol;Acc:2301394]
Coordinates
chr8:116846881-116847179:-
Coord C1 exon
chr8:116847065-116847179
Coord A exon
chr8:116846986-116847064
Coord C2 exon
chr8:116846881-116846985
Length
79 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGC
5' ss Score
6.64
3' ss Seq
GTCTTTCTCTCACCCAACAGGAA
3' ss Score
11.41
Exon sequences
Seq C1 exon
CTACCCAGTTGCGGGCTTCCGGCCCCTGCAGGACCCTCCCTTTGCTGACCTGGTCCGGGCACAGAGGTTGCTGGGCTGCTTCCAGACAGTGCTAAGTGTAGAGCTGGACCCTGTG
Seq A exon
GTGAGCCAGGGCCTGGGCTGGGTGAACTGGGGTCTCACTCTGGCCTGCCTCCCCTCATGGTCTTTCTCTCACCCAACAG
Seq C2 exon
GAAGGGCGGTTGGTGGAGAAGGAGAGCTCTGAGTGGCAGCTGCACGGGCAGCCCACTGTCCTCCTCACGCTGGCCCACATCTTCCATCACTTTGCACCACTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033378:ENSRNOT00000043825:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGACCCTCCCTTTGCTGA
R:
GTGATGGAAGATGTGGGCCAG
Band lengths:
177-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]