BtaINT0127589 @ bosTau6
Intron Retention
Gene
ENSBTAG00000031561 | RSRC1
Description
Bos taurus arginine/serine-rich coiled-coil 1 (RSRC1), mRNA. [Source:RefSeq mRNA;Acc:NM_001075404]
Coordinates
chr1:109821738-109823101:-
Coord C1 exon
chr1:109822949-109823101
Coord A exon
chr1:109822302-109822948
Coord C2 exon
chr1:109821738-109822301
Length
647 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGA
5' ss Score
5.55
3' ss Seq
TCTTTTTTTTTTCATTTCAGTTA
3' ss Score
10.39
Exon sequences
Seq C1 exon
GCAGTGGAAGCTAGTGAAGTGAAGCATGCAGCAACCACATCAGGACCCGCATCAGTGGTGGCTGATCCACCGAGTAATGAAAAGGAAATAGACCCAAGCAACATCCCTACTGCTATCAAGTACCAAGATGACAATTCTCTGGCTCATCCAAAT
Seq A exon
GTAAGACCCTTAAGCTTTAAGAATGTCAGTTTAAGTCTAGTTCACTGAAGTTAACTCAGACTGCTGTTCTTTTGGGCTGGTGACAAGAAGACCATTGAAGAAAATGGATTCATATGTTCATATTTGCCAAACATAAGACAGCTCACCCCCAGCCCTTAGAGCTGTTACCAGTATTTGAATCTGGTTTGGGCCACCCTATGTTACCTGATTTCTAGAAGATTCTTTATGTGGTTAAGAAAAATAGACAAAAAAGAAGAGTTTTGTTTCGTTTTTTCATCTGGCACTAAAAGATCTAATTCTGGCTCTGCTTATTGACTTATTGGCTTATTGACTGTGGGCATGTCTTTAATGTCATATTGTGCTGTCTTCTGTGAATTAGGGTCGTACCACTCTGTCTCTCAGAAAGTTTGTAGGAAATAAACTTTACAAAATGAAATGTAAAATTGCTAATGATTTTTATATTAGTCCTTTCAAACTTTCCAAGGGTTATTCCAAATAGATGATCTTCAGTTAAGAAGTCATCAAGAGTTAAGTAGTATCTAAATGTTGTGCTAAAGGATGTATTCTATAAAGATGATTTGTAAGATCAAATCCAAGTTATTTGGCAAACAGTGATATTTTTCTTCTTCTTTTTTTTTTCATTTCAG
Seq C2 exon
TTATTTATTGAGAAAGCTGATGCTGAGGAAAAATGGTTCAAGAGATTAATCGCTCTCCGACAAGAAAGGCTAATGGGCAGTCCTGTGGCCTAAAGTAATATTCATGTGGTTGAATTAACAGTAACATTGGAAATTTAGGTTTTTAAATCCTAGTATTAACTTTTTACTCTTAAAAATAATTTAGCTGATTATATAAAAAGGGTAATCTCATTTCATTCTTTTCTCATGTAGGCTCTACTAGTTGATTTGAACTTAAACATTGTGAATATTGAAACTAGTATAAAGTTTAAGAATGCATGAAAATGTCATACTGTTAATAAAGCTAATCCTAGAAGTATTAGTATTAAAATAAATGGTATACAGTAGTGTTTCTGAGTACAGTTTGAAAAATATCAAGTTGCTGTTTTAAGACACAATTTTGATTAGTCGTGAATATAAAAGAATCAAACTATATGCTGTATAAGTGTGAGATTTCATCTTCCATGTATTTTAAAACTGTTTGGAATGTTTTATTTCACCTTACTGCAAAATTTTAAGCACAATAACAAGCACTGTAAACAATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031561:ENSBTAT00000044707:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.843 A=NA C2=0.100
Domain overlap (PFAM):
C1:
PF154401=THRAP3_BCLAF1=FE(22.7=100)
A:
NA
C2:
PF154401=THRAP3_BCLAF1=PD(5.0=35.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCAGGACCCGCATCAGTG
R:
AGAGCCTACATGAGAAAAGAATGA
Band lengths:
352-999
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development