GgaINT0034537 @ galGal4
Intron Retention
Gene
ENSGALG00000009669 | RSRC1
Description
arginine/serine-rich coiled-coil 1 [Source:HGNC Symbol;Acc:HGNC:24152]
Coordinates
chr9:21958768-21959954:-
Coord C1 exon
chr9:21959808-21959954
Coord A exon
chr9:21959227-21959807
Coord C2 exon
chr9:21958768-21959226
Length
581 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGT
5' ss Score
8.62
3' ss Seq
TTCTCTCCTTCATCCCTCAGCTG
3' ss Score
9.42
Exon sequences
Seq C1 exon
TCAGTAGAGCCTCCCGAACTAAAATACGAACCTGTAACTGTAGGAGCAGGATCTGTCGAAGCATCTGCCCCTGAAAAAGAAACAGTACCTGCCAATATTCCTACTGCCATCAAATACCAGGATGATAATTCCTTAGCACATCCAAAT
Seq A exon
GTAAGTGTGTTGATATTTCTCTTTTAGAACAATGTGGCCCGTTGAATGTGGCCAGGTTCACGTGCCCTAATAACTGCCATGCCCTGTCATCAAATAGTCTGTGGTCTGAAGAGTGTTTATCAATGGGCCACTCACTGGCTCAAAACTACTTTCCTTGCGTAATGCAACAGAGGAATTACAAATGAGGAGCTTCCTTTGGCTAAAAGACAAATGAATACAAGTGAAATATTTTTGTTTTGTATTTTAACTTGAACTTTAACTGCTGTTTTTTTTTAAGAATTAGGAAGTTAAAAATGATTTGCCATAAGCAAACTAATGCAAGTTCCAAATAATGGATATGGCTAACAACAATGCGAGACCACCAACAAATTCACTATTTTAGGGGGGAGACTGAAGTTAGACCATGTTGGCTTTCAAATTATTGGAGTGTCAACCTTGACTTCTGTATTTATGTCACTATTTTAACACCAGTATGTAGCTGGGCTTCTTTTCTTAGCACTGACATTGCATGTATGTATTTCAACACGTTATAACAAATTGAAGTTGTGCCTACTGTTGTTCTTCTCTCCTTCATCCCTCAG
Seq C2 exon
CTGTTTATTGAGAAGGCAGAAGCAGAAGAGAAGTGGTTCCAGAGGCTGATTGCTATGCGGCAGGAAAGGCTGATGGGCAGTCCAGTGGCCTGAGCAAACTGCTGCAACCACTGTGTATGAGTTCTTTGTGAGCGCTATGGAATCCTACCATTAAATTGTTGTATTTTTCTCTTTTGAGAGGATTTTAATAGTCAGTAGGAGTTGTACAGAGAATAAATATTTCATCTGAATACACAAGAACGTTCCATCCTGCGTTTTTTCCCTAGCTCATTGCTGGGTTACTTGGGTTGCTGAGAAGGGAAGGCTATCATAGCAGTGTAATTTGCTTTTTTTTAATACTGGATTCCCCTTGGGTGCAGACTTGACAGCCCAAGGAGATGTAATTTTATACTTCCCAATCCTCCAAAAATATATAACCATGTAGCAGTTTAAAGATAAATGAAAAAAAATAAGACTGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009669:ENSGALT00000015739:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.786 A=NA C2=0.167
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCTGTCGAAGCATCTGCCC
R:
CGCAGGATGGAACGTTCTTGT
Band lengths:
352-933
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]