GgaINT0034537 @ galGal3
Intron Retention
Gene
ENSGALG00000009669 | RSRC1
Description
NA
Coordinates
chr9:24051984-24052825:-
Coord C1 exon
chr9:24052679-24052825
Coord A exon
chr9:24052098-24052678
Coord C2 exon
chr9:24051984-24052097
Length
581 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGT
5' ss Score
8.62
3' ss Seq
TTCTCTCCTTCATCCCTCAGCTG
3' ss Score
9.42
Exon sequences
Seq C1 exon
TCAGTAGAGCCTCCCGAACTAAAATACGAACCTGTAACTGTAGGAGCAGGATCTGTCGAAGCATCTGCCCCTGAAAAAGAAACAGTACCTGCCAATATTCCTACTGCCATCAAATACCAGGATGATAATTCCTTAGCACATCCAAAT
Seq A exon
GTAAGTGTGTTGATATTTCTCTTTTAGAACAATGTGGCCCGTTGAATGTGGCCAGGTTCACGTGCCCTAATAACTGCCATGCCCTGTCATCAAATAGTCTGTGGTCTGAAGAGTGTTTATCAATGGGCCACTCACTGGCTCAAAACTACTTTCCTTGCGTAATGCAACAGAGGAATTACAAATGAGGAGCTTCCTTTGGCTAAAAGACAAATGAATACAAGTGAAATATTTTTGTTTTGTATTTTAACTTGAACTTTAACTGCTGTTTTTTTTTAAGAATTAGGAAGTTAAAAATGATTTGCCATAAGCAAACTAATGCAAGTTCCAAATAATGGATATGGCTAACAACAATGCGAGACCACCAACAAATTCACTATTTTAGGGGGGAGACTGAAGTTAGACCATGTTGGCTTTCAAATTATTGGAGTGTCAACCTTGACTTCTGTATTTATGTCACTATTTTAACACCAGTATGTAGCTGGGCTTCTTTTCTTAGCACTGACATTGCATGTATGTATTTCAACACGTTATAACAAATTGAAGTTGTGCCTACTGTTGTTCTTCTCTCCTTCATCCCTCAG
Seq C2 exon
CTGTTTATTGAGAAGGCAGAAGCAGAAGAGAAGTGGTTCCAGAGGCTGATTGCTATGCGGCAGGAAAGGCTGATGGGCAGTCCAGTGGCCTGAGCAAACTGCTGCAACCACTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009669:ENSGALT00000015739:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.837 A=NA C2=0.167
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTAGAGCCTCCCGAACTA
R:
CAGTGGTTGCAGCAGTTTGC
Band lengths:
260-841
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]