HsaINT0143704 @ hg19
Intron Retention
Gene
ENSG00000174891 | RSRC1
Description
arginine/serine-rich coiled-coil 1 [Source:HGNC Symbol;Acc:24152]
Coordinates
chr3:158261124-158262576:+
Coord C1 exon
chr3:158261124-158261276
Coord A exon
chr3:158261277-158261971
Coord C2 exon
chr3:158261972-158262576
Length
695 bp
Sequences
Splice sites
5' ss Seq
AATGTAATA
5' ss Score
-1.48
3' ss Seq
TTTTTCTTTTCTTATTTCAGTTA
3' ss Score
10.38
Exon sequences
Seq C1 exon
TCAGTGGAACCTAGTGAAGTGAAACAAGCAACTTCAACATCAGGACCAGCATCAGCAGTTGCTGATCCACCCAGTACTGAAAAAGAAATAGATCCTACCAGCATCCCTACTGCTATCAAGTACCAAGATGACAATTCCCTGGCCCATCCAAAT
Seq A exon
GTAATATCCTTAAACTTTACGAATGTCAGTTGAAGTCTAATTTACTGAAATTATTTCAATCTGTTATCCTTTTGTGCTAACACCAAGGAGACCATTGGAGGAAACAGGTTCATATTCCCTTGCTAAAAATAGGCATCTGGCCCCCAGGCCTTTAGAACTGTTATCTATATTTGAATACAGTAGGGTCCAACTCATGTTGCCTAACCTGTAGAAGTATTCTGTCTATGGTTAAGAAAAATAGACAAAGAGAAGCATTTTTTCCTTTTTTTTTTTTTTAGCTGAATTGATCAGCACCATGAGAAGTGTTTGTTTAAAAATCTAGCACTAAAAGTTCCATTTCTGAGCTCTACTTTGTTCATTATCAGTGAGCACATCACTAACATCATACTTTGCTGTCTTCCATGAAATGTTGTAATTCTGCTGTTTTGGAAAAGTTATAGGAAATAAACTTCACAAATATAAGGTACAAAATTGTTAAGCAATGATGTTGATACTAGTAGTTCTTTTACTCCAAGAATTTCTGAGCATTACTAATTCCAAATAGATAGTCATCAATTAAGAGGTCATCAAGAGTTAAACAGTATCCAAATCTTGTGTTGAGAGATATATTCTACAAAGGTGAGTTCTGTCATTTTAGGTCAAATTCAAGTTATTGGGAGACAGTAACATTTTTTCTTTTTCTTTTCTTATTTCAG
Seq C2 exon
TTATTTATCGAGAAAGCTGATGCTGAGGAAAAATGGTTCAAGAGATTAATTGCTCTCCGACAAGAAAGACTAATGGGCAGTCCTGTGGCCTAAGTAATATACATATAGTTGGATTGGATTGTCAGCAGTAACATTGGAAATTTAGGTTTTTAAATCCCAATATTAACTTTTTACTCTTAAAAAGAATTTTGCTGATTATATATAAAGGTAGTCTCATTTCATTTGTCTCTCATGTAGGCTTGAATATTTGTTAATTTGAATTAAATCAAACATTGTAAAAATTAAAACAAAATTTAAGATTGCATGAAAATGTTATACTGTTAATAAAGCTAAACATAAATAAGTCTGTTAAAATGAATGGTAGACACTAGTGTTTCTTAGTGCAATTCAAAAAATGTCAAGATGTCATTTAAAGACACAATTTTGATTAATTATGCATACATGAGAATTGAATTACATGCTATAAATATGAGATTTCATCTTCCGTATGGTATTCAACCATTTTTAAATATTTTATTTCACCATATTGCAAATTTTTAGGCACAATAAAAAGCACCCTAAACAATGTAAGCAGAATGTGCATGTTAAAGAACATATTTATGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000174891-RSRC1:NM_016625:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.898 A=NA C2=0.144
Domain overlap (PFAM):
C1:
PF154401=THRAP3_BCLAF1=FE(21.9=100)
A:
NA
C2:
PF154401=THRAP3_BCLAF1=PD(8.3=61.3)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCAGGACCAGCATCAGCAG
R:
CAAGCCTACATGAGAGACAAATGA
Band lengths:
358-1053
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)