MmuINT0137652 @ mm10
Intron Retention
Gene
ENSMUSG00000034544 | Rsrc1
Description
arginine/serine-rich coiled-coil 1 [Source:MGI Symbol;Acc:MGI:1914130]
Coordinates
chr3:67355474-67356559:+
Coord C1 exon
chr3:67355474-67355626
Coord A exon
chr3:67355627-67356220
Coord C2 exon
chr3:67356221-67356559
Length
594 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGA
5' ss Score
3.37
3' ss Seq
TCTCCTTTCTCTTCCTGTAGCTA
3' ss Score
11.14
Exon sequences
Seq C1 exon
GCAGTAGAACCAAGTGAAGTGCAGCATGTGACTGCGGCATCAGGACCAGCATCCGCAGCTGCTGAGCCACCCAGCACTGGAAAGGAAATAGACCCTGACAGCATCCCCACGGCTATCAAGTACCAAGATGACAATTCTCTAGCTCATCCAAAT
Seq A exon
GTGAGACCCTTACACCTAGTGCCTCTGCTTACTGAGCCACCCAAGCAGTGTCCCTTCCTCCTGACTCTAGGAAGACCAGTGCAGAAGAGTTCATGGCTTCCCTTGGCTACAAATGAGCAACTTACTTCAAGCCTTATGGTCTTTGTCATATGTTTTAATCTGGTGTTGTATAAACATGTTTCCTGACTTCCAAAACTGGTTTGTACTTAAGAAAAATGGTCAAAGATGGAAAATGGTTCTCTTTTTTGTAACTGAAATGGATAAGTTTTATACAGTCAAAATTCTAGTGTTAGCCCAACAGCTGTGACCCTGTCACTAATACAATAGTCTATGTCTTTACGTAATGACATGACTGTTTCTCAGAAAGGAGCTTGCAGATGTAGGCTGTGAAGTTGCAGGTCAGGGTCAGGTACTTGATGACTGGTGAGGCCTCACAGTGGGTGGGAGTTAAGCAGTGAAGGAGGCAGCAACGAGGGTTGAGCTGCACACACTGTTGCCCTTGGATTATCCTGTCCAAGGGATTCATGTCCCGTCACATCAGCTCCTAGCTACTAACACACACTAACGTGTTCCTTCTCCTTTCTCTTCCTGTAG
Seq C2 exon
CTATTTATTGAAAAGGCCGAGGCTGAAGAAAAGTGGTTCAAGAGATTAATCGCTCTCCGACAAGAAAGGCTGATGGGCAGTCCCGTGGCCTAAGCACGGACTTACGGTTGGATTGACAGTAACCTCGAAAACTTAGGTCGTAAAATTATATTACCAATATTAACTTTCACTCTTAAAAATAATTTAGCCAATTACATAAAAAAGAAATCTCATTTCTTCCCTCATGTTCAACTAAATATGTGGTAATTTGAATCTAACATTGTGAACAGTGAATCCGTTATAAAAGCTCTGAGTGCATGAAAACATATTTCACTATTAATAAAGTGAATAGTAAAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034544:ENSMUST00000162036:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.902 A=NA C2=0.119
Domain overlap (PFAM):
C1:
PF154401=THRAP3_BCLAF1=FE(22.2=100)
A:
NA
C2:
PF154401=THRAP3_BCLAF1=PD(7.1=51.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCCACGGCTATCAAGTACC
R:
TGTTTTCATGCACTCAGAGCT
Band lengths:
355-949
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types