BtaINT0128930 @ bosTau6
Intron Retention
Gene
ENSBTAG00000031917 | SCAF8
Description
SR-related CTD-associated factor 8 [Source:HGNC Symbol;Acc:HGNC:20959]
Coordinates
chr9:92857662-92860276:+
Coord C1 exon
chr9:92857662-92857762
Coord A exon
chr9:92857763-92860162
Coord C2 exon
chr9:92860163-92860276
Length
2400 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGT
5' ss Score
8.62
3' ss Seq
GAAAAAAAATTTTTTAACAGATG
3' ss Score
5.84
Exon sequences
Seq C1 exon
TATGCAGTACTACTCTGTGGGTCGGTCAGGTGGACAAGAAGGCAACACAGCAGGATTTAACCAACCTGTTTGAAGAGTTTGGACAGATTGAGTCCATTAAT
Seq A exon
GTAAGTATCAATTCTTAAATATAATAGTGTAGGGTTTGGAAAAATATAGGGAGTTTTTAGTCACTTTGCATCTGCCTTTAATCACATTTTTGTGAGGATTATTTGACTCTGATCATTTTTGTGTTTATTCTCCTGCTGTCTCCATAATTAATTTTTCTTTTTTTAATGGAATTCTTAACAAAATATTTTTAGGGGCCTTACTACAGTGTGGTAGTACTTGATTGCTAAAAACATCAAATGAGTTAGCAGGAACCATATGTATGATCTGGTTTAATTCTTTTTTTCCCTTTTTTAATGAAAATGGAGAAACTGAGTTAGAATTATCATTATTTGCACCTGAGCATGTCGGTGATGGTGGAGACACAGCTGGACGGGAGGTCCCAGTCTTCTGCCAGCCTCCTTCCTCCCCTTCCCCACCTCGCCCTCTCAGAGCAAACCCCGAGGCAAGAGAACCTATGTGGCCTGAGCACAGTTCCCTCTCTCCTCAGTGTGATTCTTTCCCTGTACCCAGTCCCCTTCTTTGAATATTTTCTTCTTCCTGAAGGACTAGTGTTTCTCCTTGGAGCTAAAACTAAGCCATGAAATGTTTTGTAGTCATTTGTTTGAGGAGACTTCAATCCTGATTTTATTCACTGTTACTGTACATTAATGTCTTTTGGACATTTTTCATCATTATTTACCAGGAAATTAACTGGTTTTTCCTTTCTAGTCTTAGAGTTCTTACAGTCTCAATGTTCCTTATATGGCCAAATTTGACTTTCTGGTATAAGTAACAGCAGTGTTTATTTAAATTGAATTAGACCATTTTGAATTTTACTTTCAGTGGAGTGTGACCACATTGGAGCCTCACAGGAAGCTGGTTAATAATTATTCATATATTGTTACTTTACCAGGGAGGAACCTAAATGATTTGACTGAGTTACATGGATAGTAAATAACTGATTAGTTAATAAATAATAAATAATTGGTTGAATGTTTCAACTTAGGTATTTCAGATTCCTCTTTTTATACCATAAAAGTGTTGAAGGCTTCTCTTTTTGTCTTTTTAAATTTCACCTGTCAGAATTTAAGTAATCTTTCAGAGTTTGTAATCATGTAACCTCTCAAATTTTTTCCTGATTTTGTACTACGTTTAAACTAATGGTTCTCAGCTCTAGCTGCATATCAGACATGGGCTGACATTTGAAAAAATATGATGCCCATGATCAGTATCTTTAGATTCTTATCAAAGTGCCAAAATTACACGGGTGAATTTGATACAAAACCAGGAATCATTGCTCTGCACAGATCCTGAATCCAAGTGGCGTGCTGTATTTCACATTGTGTATGCCATGTCTAGGCTTTCTCGCACCACAGTCATTTGGACATCAGTGTGTCTCCCTCTTCTTCTGTCTTACCTTATAATAGTGTATTATTTACAAGTAATAGGCATTAAGTTATTTTGTGAAGTGAAGTGTACTAAATGGCTAGTGATAAAATCCAGGATTTGAAACACTGATGGAAGACTTAATAAACCTTTCAGTTGGTTTGGGGGGAATTTGAAGACTGAGAAGAGTCCATTAGATTTAGAATTTAGTAGGTCATTAGCTTGAAGAAAATATTTTTGGTGGTTTGGGGAGGGTTTGGATCTACATTGCGAAAGATGAAGAATTATGTAAGGGGTTAGATAAGCTTCTCTTTTGAGAAGTTTGGAATTAAGAGTTGATAGCAGCAGCAGCAGCAGCTTGAGATATTAGCAAGACTGAGGGAAAGGTTATTTTCACAGCGAAAGCTTATGTGATGACTACTAATAAAGGGGTAGAAGACCTTGTAAGTTCTTTATAAACTGAAATACTCCATGTATTTTTCTGAATTAATACGTTAAAGATAATTTTATGATTTGGCAGTTCATAGAGTAGTTAAATGCTACAAAAATTGAGATCCTTATGGTGAGGCTATCTTCCTATTCATACTAAAATCTTTGGAAGTAGTTGGGCAAAGTAAAGTTTTATAAAATTGAAAAGCTTTCATTTTATTGTTGTAGATTTTGGACTTTAATATTAAAGATAAAATATTTTGGCCAAACAAAAATCCTTCTCACAATACCCAACATAACATTTGTAAAATTATAAATACTACTGTAAATAAATTACATGCTTCAAATATTCATTGTGTAGTGAAACTTTGATTGATATGTGATATTTAAGATTTCGTGTATATTAGGCTTAGAATGAGTCCCAGCTAGCTTCTGAACTTTTCTTTTTAAGTAATTGTATATGAATTGTACCAATAAACAGCCAGAGGAAGAAAGGGGGAAAATGATTCATCAGTAATCAATGTTCTGTTCTATTAAAACCATAAAATGCCAGAAATGACTTGCCCTCCTAATACCGTTTCTAAAGAAAAAAAATTTTTTAACAG
Seq C2 exon
ATGATTCCTCCCAGAGGCTGTGCGTATGTCTGCATGGTTCATCGACAAGATGCATTTCGAGCTCTTCAGAAACTTAGTTCCGGCTCGTATAAAATTGGATCCAAGGTCATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031917:ENSBTAT00000045257:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064956=Transformer=FE(23.4=100),PF0007617=RRM_1=PU(41.8=82.4)
A:
NA
C2:
PF064956=Transformer=PD(7.1=26.3),PF0007617=RRM_1=FE(55.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]