DreINT0131086 @ danRer10
Intron Retention
Gene
ENSDARG00000100056 | scaf8
Description
SR-related CTD-associated factor 8 [Source:ZFIN;Acc:ZDB-GENE-030131-3703]
Coordinates
chr17:48854545-48857127:+
Coord C1 exon
chr17:48854545-48854645
Coord A exon
chr17:48854646-48857013
Coord C2 exon
chr17:48857014-48857127
Length
2368 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
CTGTATACTTCCCTCCCCAGATG
3' ss Score
10.74
Exon sequences
Seq C1 exon
TTTGCAGCACTACTCTATGGGTTGGTCAAGTGGACAAGAAAGCCACCCAACAGGATCTCACAAACCTCTTCGAAGAGTTTGGCCAGATTGAATCTATCAAT
Seq A exon
GTGAGTTGAGTTTTAAGTATAAATGATACAACTTGTAGTTACAACTTGTAGTCATTATAAATGATTGTGATTATTGCTACTCATGTGATGTTGGATTTATACAACAATTCGACAGTCCAAATGTCTAAGTTAACTGCTAACAGCAAAGCAATAGCCTTTTTTTGCCAATTTAAAAGTCACTTTTGAAATAACATTTGACTTTTTTTATTGCATCATAGTTTTATAATGTCTTAGTGATAACATAAGTCATCAATAGTGGTCAGAGTTCTGTCTGCTTTAAGGCTGATTTAAACTTCTGCGTCAAACGCCGGCGTATGCTACGACGCTGACGCATAGCCCTTCGCCGTGGCCGTCGGCGTCGCTGACGTGCACCTCTCAAAAAATGTAACTACATGCACAACAAAGCGTAGCGCAAGCTCTGTGATTGGTCGGCTTGGTAGTGCTGACGAGTCTGGGCGGGACCGAGAGCCGCGCGAATGAGGCGAGCCCAATGTAGCGATTATTTACAAGTGTGGAGTCCCGTGAAGGAGCTCCGGATGGAAAGTTTTGTTTTGTGTTTACCTCATAGTTAAAGTTGTTGCACGTCCGCCAGTTTCTGCGTCAAAATGAGCGAGTTTGAGCCACTTGTACATCCAGGAAGTGTTCAGGAAAACCAAAACAGCAGCGAAGAAACTCGACAAAGAGGAACATTTACACCTCACTGCCAACTAGCGTTTCGGAAGTGTTAATGCAGACCAACAGAGACAGCGCGCAGAAGTATAAATGCACAGCTACGGGCGTTGCATGCGCCGTGGGTTACGCCGGTCACTTGACGCAGAAGTATAAACCAGGCTTCACTCTGCTGTTCCCAGAAATTCACCAACATTAACCTAATAAAAGCCAAAACAAACAATAAGTGAAGTTTTATAAACTAATTTCAAGAGGAGCATGTGATATGATTGATTGCGTCTGGTCTCTCATCCGTTAACGGCGATAAACCAATCGGATGAATCCAAATCTACAATAAATAGACCAATTTTACCCTACTTGTTTTATCTTCGTTTACCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCCCCCATTACCCCCCAATTTCTCTTTTACCAGAGGGAGCCTTCGAGACCTACCAAATCATGGACTCCCTTTATGCTAATGGCCTGTTTCCACTGAGTAGTATGCTACGGTTTGATACACTTTTATGGACGTTTCCACTATCAAAAGGTACCAAAAAAGCGAACTGTACCGTACCACTTTTTGGGTGCTCTTTTGTAAAGGGTAGCAAAAGGCAGAGGCAGAGCCAGACGCACAACTGAACATTATTGGTTTACAGAGATAAGTTGCTAGCGTGTGCACAAAAACAGAAAAAAGCCGTAAGAAAAAAAGGAGATACTTTCAGCAACCTAAACCATGAACAAACTGTCGTGTTTAATTATTATCATCGCCCTTTGGACTATTATGAACTGAGAATTACTTTCTAACAGAGGTCACATGTGCTGGTAAAGATTAGAGATACAGATGAGAGGTTGAGCACTCTCAGATGAGAGTACTACAGATGAGCGCTGACTGTGGGCTCTATGTTACATGTTGTTTTTGAACCCGAATAAGAACTAAATGTCTGCTGTGTGTAGTTTTTCTGTAGTTGATAACATATCGGAGACTGTAAGGGGCTCTATATGTTCATATATGTTGCATTTATTTTATATAATTTCAGACGTTACAGTAGGCTATTTCACACTGTCATTGATCTGCATTTAGAATCAAATCCTGTTAATAAAAAGGTTAGTAATGAACATTTATACACACGTATTTATGTGTATAAAGCATCTGTTTTCTGAGAAGTGCTTCATCTGATATGTGAACGATCCATACAGCTTTACTTTGACATTTTCTCAAGTGAGAATGACGTCAACTGAAACTTTGTTGACGGTTGGTACCCTTTTGGTAGTGGAAACACAAACCTGATAAAGGTGATCCGTACCGACCCATACCGTACTGTACCACCCAGTGGAAACGGGCCATCAATGACCAGGTGGGAGCCCTAAGCTCAATCGTCTCCAAGCTCATGTTTTTACCCAGCACAGCATGCCAAACCTGCTAATAGCGTCAAGCTACTCTTGAAATTGCTGTGTTGTAAAATTGCAGGGGTATTTACCAGGGGTGTTATCACTGTACAGTTATCACACAAATGACTGTATATGAATGTGGGATTTCTTTATTAAATCTTCCTCTGGTTTTTGAGTAGGTTTAGTGACAACTGTATACTTCCCTCCCCAG
Seq C2 exon
ATGATTCCTCCCAGAGGCTGCGCTTACATCTGTATGGTCCATCGTCAGGACGCATATCGGGCTCTTCAAAAGCTGAGCACCGGCTCTTACAAAATTGGTTCAAAGGTCATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100056:ENSDART00000161898:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064956=Transformer=PD(21.4=88.2),PF0007617=RRM_1=PU(41.8=82.4)
A:
NA
C2:
PF0007617=RRM_1=FE(55.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]