HsaINT0138311 @ hg38
Intron Retention
Gene
ENSG00000213079 | SCAF8
Description
SR-related CTD associated factor 8 [Source:HGNC Symbol;Acc:HGNC:20959]
Coordinates
chr6:154815716-154818592:+
Coord C1 exon
chr6:154815716-154815816
Coord A exon
chr6:154815817-154818478
Coord C2 exon
chr6:154818479-154818592
Length
2662 bp
Sequences
Splice sites
5' ss Seq
AATGCAAGT
5' ss Score
0.87
3' ss Seq
AAAACAATTTTTTTTATTAGATG
3' ss Score
5.88
Exon sequences
Seq C1 exon
TATGTAGTACTACTCTCTGGGTTGGGCAAGTGGACAAGAAGGCAACACAGCAAGACTTAACCAACCTGTTTGAAGAGTTTGGACAGATTGAATCCATTAAT
Seq A exon
GCAAGTATCAGTTCTTAATAATTTAAGGTTTTAAAAAAGGAGGTTTTTATTAATACAAAGAATCACTTCTGTTCCTAATTAGCCCAGTAATGTCTGCCTTAAATAATACACATCTTTAAAAGGATTGCTTTACTTTGATAATGTCTGTGTTTATTTTGGTGCTGTTTCTCTCCTTAATTATTTTTATTTTTTAGTGGAATTCTAACAAAATGTTCTTGAGTTTTATAGCAGTGTACCATGCTTGATTCCTGACATCATCAAATGTTTGAGTTAGCAGGAACCCTATGTGTGGTCTGGTTTAATTCCTTTTTTTAAAAAACTGTCTCTGAGGAAATGGAGAGTTCCACAGAATTGTAGTCACTTGCACATGACCACAGAAGCAGTCGTGGAGACACAGCTGGACTTAGGATCCCAGTTTCTTTTGCCTTTTTCTTCTCACTCTCTCACCCTCTCGTGCTCTTTTACTCTCTTTTTTATCAAACAGAGCAAATGTTAGGTAAGAAAATCAGTATGGCCAGCGAATTGCTAGTAAGTTGAGCATAACTCTTTCACTCTTGATTCTTGCACTAGTTTTGCACCACTCAGTCTCCTCCTTTGAGTCTGTGTTTTATTCTTCATGAGGCCTGATGCTTTTCCCTGAGGGTCAGACATCTTTGGTTAGCTATTTTAATTGTTCTTTTATTTAAAAATTACGTGCTGTCTTTCTTCCTCCTGCTGTGTGGTGAAATGTTTTGTAGTCATTTGTTTGGGGAGACATTTATCCATCCATCCATCCATCCATCCTGGTAAACAGGAAGTATGAGGAGACTTAATTCATCAGGCGTCTGATTTCATTCCCTGTGGTTACAGTTTTATGTCTGTGGGATCTTTTTATCATTATTTATCAGAAAATTGCCCAGTTTTCCTTTCTAGTCTTAGTTCCCAGTCTTCCTTAAATGGCCAAACTTGACTTTTCTGTAATAGTAACAGAATTCTTTATTTGAGTTGAGTTGAACCATTTTGCATCTTACTTTTGACTGTGTGTGATCTTTTTGGAGCCTCATAAGAAGCTGGTTAAGTAATTCAAATACTGTTGTTTTCTAATGAGGAAACTAAGTGATTTGCTTGAGTTACACAGGTGATAAAAAGATGATTGGTTATGGATTTCAACTTGGGTACTTCAGATTTCTCTTTCTTTACCACAAGAGTGCTGTCGACCTCTCTTATTCTTTTGTCTTTTTAGATTTTACCTGTCAAAACATCACTGTCTTTCAGAGTCTATAATCATATACTTTCTCTGAAGTTTCTTTCTGATTTACCCCTACCTTTAAACTAGTGATTCTCAGTTCTAGCTGCATATCAGTAATATGTCCTGACATTTGAAAAATTAGGGATGCCCATGCTCGATGTCTTCAAATTTTTAGCAAAGTGTCACAGCTGCATAGGTGGTTCTGACGCACAGCAGGAATCATTGCTCTGAACAGACCTTGCATCCAAGTAGCATTTTGGATTTTCCTGTTTGATGATCGTATTTGTAATCTTTCTTGTATCACGGTCCCTTGAGCATCTGTTTGCCTTATCCCTCTCCTTTATTGTATTATGTTTTGAGAGCATAGTACTTATAAATAATAAGCACTAAGTTATTTTGTGAAATGAAGATTCATAATCCACTCATTTAATTTTGGGGACTTCAAAGACAAAGTCCATTCAGTTTGGCATTTAGTAGGTCATTGGTGAGCTTGAAGAGAGTAAAGTATTTTCCAGTGGGTTGGTGAGGAATTAGAGCTAGATTGTAATAGATAAAGAAGAATGTCAAGGTTTAGATATATTTCTCTTTTAATAAGTTTGATATTAATATTAAAGAGGCAGTAGCTTGAAGTGTTAGCAAGGCTGAGGAAAAGGTTTCTATGTAAGCTTTAATAACAGATATGGCTTATTAGGTATAGAGTGAAAATAAAATGATAGAATGCCTTTTGAGTTTCTCAGAAAGAAACAAATGCTGTGAATAGTTTTCTGAGTTAATATATTAAGGATAATTGTATGGTCTGGTGTAGAATAGTTAAATGCTTTATAAATCAGTCTCAGATCTTAACACTGAGGCTATTTTCTTTATGTTAAAACTTTGCCAGAAGCACTTGAACAAAATAAAGTTTTATAAGACTGAAAATTTTTATCATCAATTGTTTCAGATTATGGATTTTATATTAAGGATAAGATAATTCCCCAAAAGAAGAATCCTCTTTGCATTACTCAGTATAACATTTGGAAAAATTGAAGTAATATTAGGAATAAATTGTTGCCTTCAAATATTTTGGCCATATAATACTACTTTCCTTTTATCTGGTGGTATTATGTATACGAAGTTATACATTTTGTTTTGTTTTTAATAGTTCTTTTTCTGTATTCAGAAAATATTGCCATGTGATATTTAAGATTTCACATTTATCGTGGCTTATGATACCTAATTGAGTTCTGAATTTTGGGATTTTAAAAATTGAGTTATTAATTGTACATGAATTGTACCTACTAATAAACAGCTGGAGGAAGAAAGGGGAAAATAAGTCAGTAATCTATCAGAATTGAAGTATTAGTAAGTAGTCAATGTTTTGTGTCATTTAAACCATAAAATACCAGAATGAGTTTCTGTTCTTATACCTTTTCTTAAAACAATTTTTTTTATTAG
Seq C2 exon
ATGATTCCTCCCCGGGGCTGTGCTTATGTCTGCATGGTTCATCGACAAGATGCATTTCGAGCTCTTCAGAAACTCAGTTCTGGATCATATAAAATTGGGTCCAAGGTCATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213079:ENST00000367178:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064956=Transformer=FE(24.1=100),PF0007617=RRM_1=PU(41.8=82.4)
A:
NA
C2:
PF064956=Transformer=PD(7.3=26.3),PF0007617=RRM_1=FE(55.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development