RnoINT0131080 @ rn6
Intron Retention
Gene
ENSRNOG00000016919 | Scaf8
Description
SR-related CTD-associated factor 8 [Source:RGD Symbol;Acc:708362]
Coordinates
chr1:44082793-44083442:+
Coord C1 exon
chr1:44082793-44082893
Coord A exon
chr1:44082894-44083328
Coord C2 exon
chr1:44083329-44083442
Length
435 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
AAAGGACTTTTCCCTCATAGATG
3' ss Score
6.22
Exon sequences
Seq C1 exon
TATGCAGCACTACTCTCTGGGTTGGCCAAGTGGACAAGAAGGCTACACAGCAAGATTTAACCAACCTTTTTGAGGAGTTTGGGCAAATCGAATCCATTAAT
Seq A exon
GTGAGTATCTCTTGAGCTCTCTTCATGTCCGACATGGTGATTCTCAGCGAGACACGCGCTGTTCACTCTGCTCAGTGTTCTCTGTTTGCTATGAAGCTCCTGAATGTGCAGATTATTCATGGTTTTTGTTTTTTTGTTTTTTTTTTTGTTTTTGTCTTTTTTTTGTTTCACTATACAGTTCTGTTTCTGTAGGCAAGGAACTGATAACATGTATTCAACATTTCACCTTTATTATGGCTTAGAATGGAAGGGTGGATATAGGGCTTATTAAGAATAAATAATTGATTACCTATGTGTTGTGTCAATAAACAGAGAAAGAGAATTAATGTGGTGGTTTGGTCAGTTGTCATACATGTTCAGTTTTATGAGAAGCAAATGTCAGAATGAATTTCCATCCTTCTGCTCTCTGTAAAGAAAAGGACTTTTCCCTCATAG
Seq C2 exon
ATGATTCCACCCAGGGGCTGTGCATATGTCTGTATGGTTCATCGACAAGATTCATTTCGGGCTCTCCAGAAACTGAGTTCAGGATCCTATAAAATTGGTTCCAAGGTCATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016919:ENSRNOT00000065733:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF086487=DUF1777=PD(15.8=44.1),PF0007617=RRM_1=PU(41.8=82.4)
A:
NA
C2:
PF0007617=RRM_1=FE(55.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCAGCACTACTCTCTGGGT
R:
TGACCTTGGAACCAATTTTATAGGA
Band lengths:
209-644
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]