BtaINT0128957 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015553 | SCAI
Description
suppressor of cancer cell invasion [Source:HGNC Symbol;Acc:HGNC:26709]
Coordinates
chr11:95959656-95960060:-
Coord C1 exon
chr11:95959962-95960060
Coord A exon
chr11:95959809-95959961
Coord C2 exon
chr11:95959656-95959808
Length
153 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
3' ss Seq
CAGTATTGCTTGTTCTCCAGGCG
3' ss Score
6.03
Exon sequences
Seq C1 exon
GAACTGTCAGATGAAATTGAAGATTATACTCACCGCTTTAATACTGAAGATCAAGTGGAATGGAACCTGGTACTTCAAGAAGTAGCAGCTTTCATTGAG
Seq A exon
GTCAGTTCTTGGCAAGAAAGGTTGTCAGAATTATTTAAGTAAATGTATATGTGGTGTACATATTTATTTGTATATGTAAAAAAGAAGGAATAATTTCTTACATTGATGTTTTGTCTTGGCTATAAACCACTTACAGTATTGCTTGTTCTCCAG
Seq C2 exon
GCGGACCCTGTAATGGTATTAAATGATGATAATACCATTGTTATCACATCTAATCGCCTTGCTGAAACAGGAGCCCCATTGCTGGAACAAGGCATGATTGTGGGACAGTTGTCTCTGGCTGATGCACTCATTATTGGTAATTGTAATAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015553:ENSBTAT00000020665:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF120703=DUF3550=FE(6.5=100)
A:
NA
C2:
PF120703=DUF3550=FE(10.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAAATTGAAGATTATACTCACCGC
R:
TACAATTACCAATAATGAGTGCATCA
Band lengths:
234-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development