HsaINT0145312 @ hg19
Intron Retention
Gene
NA
Description
NA
Coordinates
chr9:127781078-127781484:-
Coord C1 exon
chr9:127781386-127781484
Coord A exon
chr9:127781231-127781385
Coord C2 exon
chr9:127781078-127781230
Length
155 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
3' ss Seq
CTTATTGCTTTTTTCTTTAGGCG
3' ss Score
9.16
Exon sequences
Seq C1 exon
GAATTGTCAGATGAAATTGAAGATTATACTCACCGATTTAATACTGAAGATCAAGTGGAATGGAACTTGGTGCTTCAAGAAGTAGCAGCTTTCATTGAG
Seq A exon
GTCAGTTTTTGATAAGAAAAATCATAATTATTGATAAATAAATGACCGTGTAGTTTATGTTTTTATTGTGTGTATATGTCAAGAAGAAGGAATAGCTTACTCTATTGATATTTAGTCTTGGCCATTCGTTAAGTTCTTATTGCTTTTTTCTTTAG
Seq C2 exon
GCGGATCCTGTAATGGTATTAAATGATGATAATACCATTGTTATCACATCGAATCGCCTTGCTGAAACAGGAGCCCCATTGCTGGAACAGGGCATGATTGTGGGACAGTTGTCTCTGGCTGACGCACTCATTATTGGTAATTGTAATAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
-SCAI:NM_001144877:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCACCGATTTAATACTGAAGATCA
R:
TTACAATTACCAATAATGAGTGCGT
Band lengths:
218-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)