HsaINT0145312 @ hg38
Intron Retention
Gene
ENSG00000173611 | SCAI
Description
suppressor of cancer cell invasion [Source:HGNC Symbol;Acc:HGNC:26709]
Coordinates
chr9:125018799-125019205:-
Coord C1 exon
chr9:125019107-125019205
Coord A exon
chr9:125018952-125019106
Coord C2 exon
chr9:125018799-125018951
Length
155 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
3' ss Seq
CTTATTGCTTTTTTCTTTAGGCG
3' ss Score
9.16
Exon sequences
Seq C1 exon
GAATTGTCAGATGAAATTGAAGATTATACTCACCGATTTAATACTGAAGATCAAGTGGAATGGAACTTGGTGCTTCAAGAAGTAGCAGCTTTCATTGAG
Seq A exon
GTCAGTTTTTGATAAGAAAAATCATAATTATTGATAAATAAATGACCGTGTAGTTTATGTTTTTATTGTGTGTATATGTCAAGAAGAAGGAATAGCTTACTCTATTGATATTTAGTCTTGGCCATTCGTTAAGTTCTTATTGCTTTTTTCTTTAG
Seq C2 exon
GCGGATCCTGTAATGGTATTAAATGATGATAATACCATTGTTATCACATCGAATCGCCTTGCTGAAACAGGAGCCCCATTGCTGGAACAGGGCATGATTGTGGGACAGTTGTCTCTGGCTGACGCACTCATTATTGGTAATTGTAATAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173611:ENST00000336505:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF120703=DUF3550=FE(10.0=100)
A:
NA
C2:
PF120703=DUF3550=FE(10.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCACCGATTTAATACTGAAGATCA
R:
TTACAATTACCAATAATGAGTGCGT
Band lengths:
218-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains