BtaINT0130567 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008083 | SEL1L
Description
Bos taurus sel-1 suppressor of lin-12-like (C. elegans) (SEL1L), mRNA. [Source:RefSeq mRNA;Acc:NM_001206908]
Coordinates
chr10:93926359-93926976:-
Coord C1 exon
chr10:93926895-93926976
Coord A exon
chr10:93926514-93926894
Coord C2 exon
chr10:93926359-93926513
Length
381 bp
Sequences
Splice sites
5' ss Seq
ATGGTACTT
5' ss Score
5.19
3' ss Seq
TTGCTCTGCCCCTGTTTCAGTTG
3' ss Score
8.58
Exon sequences
Seq C1 exon
GGTTACCGATACTGGGCTGGCATCGGGGTCCTCCAGAGCTGTGAATCCGCACTGACTCATTATCGTCTTGTGGCCAATCATG
Seq A exon
GTACTTGCTTTTTTTGCCTTTGATGTTACCAAAAAAAAAAAAAAAACAGAGTTAATTTTAAATCTGTTGTACTACTTGAAATACTGTGACTGGCTTACTCAAGTGGAATCGTCTTTACACTAGTTGATTAGGAAGTACTTTTAAAAAGTTTGTTTGAAAAAAAAAATAAAATAAAATAAAAAGTCTGTTTTGGATTCCACTTCTTAATATTGTGTGGGAAAGCAACTGAATTTCGTTGAGATGACTGTTTCGTACTCCGTAGACCACAATAGAAGAAGTTCCTTTAACACCGTGTCTGTTGGCACTTGGAGCTGGAACGGCACTTCTCACTGTGGGACCACCCCTCTGACTCATCCCCGTGTTGCTCTGCCCCTGTTTCAG
Seq C2 exon
TTGCTAGTGATATCTCGCTGACGGGAGGCTCAGTGGTGCAGAGAATACGGCTGCCTGATGAGGTCGAAAACCCAGGAATGAACAGCGGAATGCTCGAGGAAGACTTGATTCAGTATTACCAGTTCTTAGCTGAAAAGGGGGATGTGCAAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008083:ENSBTAT00000010628:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.038
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF082387=Sel1=PU(8.1=5.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTACCGATACTGGGCTGGCAT
R:
GCTTGCACATCCCCCTTTTCA
Band lengths:
231-612
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development