RnoINT0132639 @ rn6
Intron Retention
Gene
ENSRNOG00000004464 | Sel1l
Description
SEL1L ERAD E3 ligase adaptor subunit [Source:RGD Symbol;Acc:620147]
Coordinates
chr6:115591506-115592352:-
Coord C1 exon
chr6:115592271-115592352
Coord A exon
chr6:115591661-115592270
Coord C2 exon
chr6:115591506-115591660
Length
610 bp
Sequences
Splice sites
5' ss Seq
ATGGTACCT
5' ss Score
4.67
3' ss Seq
TATTTGTCCTTCTCCATCAGTCG
3' ss Score
5.97
Exon sequences
Seq C1 exon
GGTTACCGCTACTGGGCTGGCATCGGAGTCCTCCAGAGTTGCGAGTCGGCACTGACCCATTATCGTCTTGTTGCCAATCATG
Seq A exon
GTACCTGTTTTATTTTTTTCTCTTTCATCCTGTAGGGGAAAAAATGCAATTAATTTTAAATATATATGTTTTGGTTGTAGTAATTTAAATACTGAAAATGACTCTTTTGAGTGCGCTTATCTTTTAACTATCAAGAAACATTTACATGGAGATGATGGCTCAGCGGTTAAGAACACTGGCTGTTCTTCCAGAGGACCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGAGAGCTGAGGCCCTCTTCTGGTGTGTCTGAAGACATCAGCAGTGTACAAAAATACATAAAATAAATAAATCTTGGGGCTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAAAAAAAAGAACCAAAAAAAAAAAAAAAGAACCATTTACATTTTATTCTTAAGTGTTTCACAGTGGGAGTATAATTTGTTAATGTATTATTATGCTGCTGCCTGTTGACTACTACAGAATTAGTACCATTCATCCCATGTCTGTCGACGTCTGCTTGCTACAGTTGTGGGCCTGCTCCTCTGACTTCGTCTATTTGTCCTTCTCCATCAG
Seq C2 exon
TCGCTAGTGATATCTCCCTAACTGGAGGCTCTGTAGTCCAGAGAATACGGCTGCCTGATGAAGTGGAAAACCCAGGGATGAACAGTGGGATGCTGGAAGAAGATCTGATTCAGTATTACCAGTTCCTAGCTGAGAAGGGTGATGTCCAAGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004464:ENSRNOT00000006143:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.038
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF082387=Sel1=PU(8.1=5.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTACCGCTACTGGGCTGG
R:
TGGACATCACCCTTCTCAGCT
Band lengths:
230-840
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]