HsaINT0147078 @ hg19
Intron Retention
Gene
ENSG00000071537 | SEL1L
Description
sel-1 suppressor of lin-12-like (C. elegans) [Source:HGNC Symbol;Acc:10717]
Coordinates
chr14:81964236-81964838:-
Coord C1 exon
chr14:81964757-81964838
Coord A exon
chr14:81964391-81964756
Coord C2 exon
chr14:81964236-81964390
Length
366 bp
Sequences
Splice sites
5' ss Seq
ATGGTATCT
5' ss Score
3.16
3' ss Seq
GTTTTATCCCTCTATTTCAGTTG
3' ss Score
9.48
Exon sequences
Seq C1 exon
GGTTACAGATACTGGGCTGGCATCGGCGTCCTCCAGAGTTGTGAATCTGCCCTGACTCACTATCGTCTTGTTGCCAATCATG
Seq A exon
GTATCTATGTTTCCCCTTTTACCTTTTAGGAAAAAAAAATAAATGGAATTAACTTTAAACATTTCTATTTTTATTGTTCTATTTGAAGTATTATAAATGGCTCTTTTATGTGGACTCATCTTTAAACTAGTTGAGGTTCAGAAGTACTTTTTTCTTTATATAATTTTGCTTTAGGTTCTATTTACGTTGTGAAAAAAGTTCAATTTATTAATAGATTACTGATTTGCGATCTATATAGACTACTGTAAAAACAGCTTCCTTTAACAATGTGTTCGTCAACGTTTGGCAGCTGGAATTGTACTTCTCTCTCTCTGGAACAATTCTTCTGATTTTCCTCCACCTTATTGTTTTATCCCTCTATTTCAG
Seq C2 exon
TTGCTAGTGATATCTCGCTAACAGGAGGCTCAGTAGTACAGAGAATACGGCTGCCTGATGAAGTGGAAAATCCAGGAATGAACAGTGGAATGCTAGAAGAAGATTTGATTCAATATTACCAGTTCCTAGCTGAAAAAGGTGATGTACAAGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000071537-SEL1L:NM_005065:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.038
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF082387=Sel1=PU(8.1=5.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTACAGATACTGGGCTGGC
R:
TGCTTGTACATCACCTTTTTCAGC
Band lengths:
234-600
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)