MmuINT0140869 @ mm9
Intron Retention
Gene
ENSMUSG00000020964 | Sel1l
Description
sel-1 suppressor of lin-12-like (C. elegans) [Source:MGI Symbol;Acc:MGI:1329016]
Coordinates
chr12:93063260-93063818:-
Coord C1 exon
chr12:93063737-93063818
Coord A exon
chr12:93063415-93063736
Coord C2 exon
chr12:93063260-93063414
Length
322 bp
Sequences
Splice sites
5' ss Seq
ATGGTACCT
5' ss Score
4.67
3' ss Seq
TATCTGTCCTTCTCCATCAGTTG
3' ss Score
7.85
Exon sequences
Seq C1 exon
GGTTACCGCTACTGGGCTGGCATCGGAGTCCTCCAGAGTTGTGAGTCGGCACTGACCCATTATCGTCTTGTTGCCAATCATG
Seq A exon
GTACCTGTTTTATTTTTCTCTTTCACCCTGGAGGGGAAAATAATGCAATTAATTTTAAATGTATATGTTTTGGTTGTAGTAGTTTAAATACTGAAAATGACTCTTTTAAGTGGGCTTTTAACTGTTTATCAAGAAACACATTTCTTTTACATTTTATTCTTAAATGTTTCGTAGTGGGAATCTAATTTGTTAATGTCTTATTATGCTGCCACCTGCTGACTACTACAGACGTAGCCATCAGCACCGTGTCTGTCAGTGCCTGCCACTGTCGTGGACCTGCTCCTCGATTTCATCTCATACCCTATCTGTCCTTCTCCATCAG
Seq C2 exon
TTGCTAGTGATATCTCCCTAACTGGAGGCTCTGTAGTCCAGAGAATACGGCTGCCCGATGAAGTGGAAAACCCGGGGATGAACAGTGGGATGCTGGAAGAAGACCTGATTCAGTATTACCAGTTCCTAGCTGAGAAGGGTGACGTCCAAGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020964-Sel1l:NM_011344:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.038
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF082387=Sel1=PU(8.1=5.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTACCGCTACTGGGCTGG
R:
CTTGGACGTCACCCTTCTCAG
Band lengths:
232-554
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: