HsaINT0147078 @ hg38
Intron Retention
Gene
ENSG00000071537 | SEL1L
Description
SEL1L ERAD E3 ligase adaptor subunit [Source:HGNC Symbol;Acc:HGNC:10717]
Coordinates
chr14:81497892-81498494:-
Coord C1 exon
chr14:81498413-81498494
Coord A exon
chr14:81498047-81498412
Coord C2 exon
chr14:81497892-81498046
Length
366 bp
Sequences
Splice sites
5' ss Seq
ATGGTATCT
5' ss Score
3.16
3' ss Seq
GTTTTATCCCTCTATTTCAGTTG
3' ss Score
9.48
Exon sequences
Seq C1 exon
GGTTACAGATACTGGGCTGGCATCGGCGTCCTCCAGAGTTGTGAATCTGCCCTGACTCACTATCGTCTTGTTGCCAATCATG
Seq A exon
GTATCTATGTTTCCCCTTTTACCTTTTAGGAAAAAAAAATAAATGGAATTAACTTTAAACATTTCTATTTTTATTGTTCTATTTGAAGTATTATAAATGGCTCTTTTATGTGGACTCATCTTTAAACTAGTTGAGGTTCAGAAGTACTTTTTTCTTTATATAATTTTGCTTTAGGTTCTATTTACGTTGTGAAAAAAGTTCAATTTATTAATAGATTACTGATTTGCGATCTATATAGACTACTGTAAAAACAGCTTCCTTTAACAATGTGTTCGTCAACGTTTGGCAGCTGGAATTGTACTTCTCTCTCTCTGGAACAATTCTTCTGATTTTCCTCCACCTTATTGTTTTATCCCTCTATTTCAG
Seq C2 exon
TTGCTAGTGATATCTCGCTAACAGGAGGCTCAGTAGTACAGAGAATACGGCTGCCTGATGAAGTGGAAAATCCAGGAATGAACAGTGGAATGCTAGAAGAAGATTTGATTCAATATTACCAGTTCCTAGCTGAAAAAGGTGATGTACAAGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000071537:ENST00000336735:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.032
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF082387=Sel1=PU(8.1=5.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTACAGATACTGGGCTGGC
R:
TGCTTGTACATCACCTTTTTCAGC
Band lengths:
234-600
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development